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(-) Description

Title :  CRYSTAL STRUCTURE OF PHOSPHATIDYL INOSITOL 4-KINASE II ALPHA IN COMPLEX WITH ATP
 
Authors :  A. Baumlova, D. Chalupska, E. Boura
Date :  16 May 14  (Deposition) - 10 Sep 14  (Release) - 15 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.77
Chains :  Asym./Biol. Unit :  A
Keywords :  Phosphatidyl Inositol, 4-Kinase, Atp, Lipid, Transferase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Baumlova, D. Chalupska, B. Rozycki, M. Jovic, E. Wisniewski, M. Klima, A. Dubankova, D. P. Kloer, R. Nencka, T. Balla, E. Boura
The Crystal Structure Of The Phosphatidylinositol 4-Kinase Ii Alpha.
Embo Rep. V. 15 1085 2014
PubMed-ID: 25168678  |  Reference-DOI: 10.15252/EMBR.201438841

(-) Compounds

Molecule 1 - CHIMERA PROTEIN OF PHOSPHATIDYLINOSITOL 4-KINASE TYPE 2- ALPHA AND LYSOZYME
    Chains: A
    EC Number: 2.7.1.67, 3.2.1.17
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Variant: STAR
    Expression System Vector Type: PLASMID
    Gene: PI4K2A, E, T4TP126
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS, ENTEROBACTERIA PHAGE T4
    Organism Taxid: 9606, 10665
    Synonym: PHOSPHATIDYLINOSITOL 4-KINASE TYPE II-ALPHA

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1ATP2Ligand/IonADENOSINE-5'-TRIPHOSPHATE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:359 , ARG A:360 , PRO A:363 , PHE A:364 , ALA A:367 , TRP A:368 , VAL A:444 , GLN A:445binding site for residue ATP A 1201
2AC2SOFTWAREGLN A:132 , GLY A:133 , SER A:134 , SER A:137 , VAL A:150 , LYS A:152 , GLN A:261 , LEU A:262 , PHE A:263 , VAL A:264 , ILE A:345 , ASP A:346 , HOH A:1301binding site for residue ATP A 1202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PLA)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu A:1166 -Gly A:180

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PLA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PLA)

(-) Exons   (0, 0)

(no "Exon" information available for 4PLA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:483
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhh....ee........eeee.....eeeeeee.hhh.....hhhhhhhhhhh..hhhhhhhhhhh.eeeeee.....eeee..eeee...hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhh..........hhhhhhhhhhhhhhhhh......eeeeee.......hhhhhhhh......eeeeeee....eeehhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh........eeeee..........eeeee...................hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4pla A  101 RNEFPEDPEFEAVVRQAELAIERCIFPERIYQGSSGSYFVKDPQGRIIAVFKPKNEEPYGHLNPKWTKWLQKGTGNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYKNLGRDCLVLNQGYLSEAGASLVDQKLELNIVPRTKVVYLASETFNYSAIDRVKSRIGLPPKVGSFQLFVEGYKDADYWLRRFEAEPLPENTNRQLLLQFERLVVLDYIIRNTDRGNDNWLIKYDDWVVVKEPVIKVAAIDNGLAFPLKHPDSWRAYPFYWAWLPQAKVPFSQEIKDLILPKISDPNFVKDLEEDLYELFKKDPGFDRGQFHKQIAVMRGQILNLTQALKDNKSPLHLVQMPPVIVET  453
                                   110       120       130       140       150       160       170 ||   1008      1018      1028      1038      1048      1058      1068      1078      1088      1098      1108      1118      1128      1138      1148      1158       181       191       201       211       221       231||     259       269       279       289       299       309       319|      340       350       360       370       380       390       400       410       420       430       440       450   
                                                                                                 172|                                                                                                                                                                 1166|                                                 232|                                                                 319|                                                                                                                          
                                                                                                 1001                                                                                                                                                                   180                                                  251                                                                  331
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PLA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PLA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PLA)

(-) Gene Ontology  (50, 50)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        D9IEF7_BPT4 | D9IEF7: 4s0w 5ndd 5ndz 5t1a 5v83 5v86 5v88 5vba 5xez 5xf1
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(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4PLA)