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(-) Description

Title :  CRYSTAL STRUCTURE OF PATATIN AGED WITH DIISOPROPYLPHOSPHOROFLUORIDATE
 
Authors :  S. J. Wijeyesakere, R. J. Richardson, J. A. Stuckey
Date :  17 Dec 10  (Deposition) - 01 Oct 14  (Release) - 01 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  X
Biol. Unit 1:  X  (1x)
Biol. Unit 2:  X  (2x)
Keywords :  Alpha/Beta Class Fold With Approximately Three Layers, Serine Hydrolase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. J. Wijeyesakere, R. J. Richardson, J. A. Stuckey
Crystal Structure Of Patatin-17 In Complex With Aged And Non-Aged Organophosphorus Compounds.
Plos One V. 9 08245 2014
PubMed-ID: 25248161  |  Reference-DOI: 10.1371/JOURNAL.PONE.0108245

(-) Compounds

Molecule 1 - PATATIN-17
    Chains: X
    EC Number: 3.1.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET24
    Expression System Strain: CD41
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 23-386
    Organism Common: HEARTLEAF NIGHTSHADE
    Organism Scientific: SOLANUM CARDIOPHYLLUM
    Organism Taxid: 160510

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : X
Biological Unit 1 (1x): X
Biological Unit 2 (2x): X

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1MIS1Mod. Amino AcidMONOISOPROPYLPHOSPHORYLSERINE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1MIS1Mod. Amino AcidMONOISOPROPYLPHOSPHORYLSERINE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1MIS2Mod. Amino AcidMONOISOPROPYLPHOSPHORYLSERINE

(-) Sites  (0, 0)

(no "Site" information available for 4PKA)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PKA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PKA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PKA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PKA)

(-) Exons   (0, 0)

(no "Exon" information available for 4PKA)

(-) Sequences/Alignments

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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain X from PDB  Type:PROTEIN  Length:357
                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee..hhhhhhhhhhhhhhhhhhhhhhh.....hhhhh..eeee.hhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh............hhhhhhhhhhhhh..hhhhh..eeee.eee....ee..........hhhhh.hhhhhhhhhhh.......eeeeee.....eeeeeeee........hhhhhhhhhhhhhhhhhhhhhhh..hhh.eeeeee......hhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeee.....hhhhhh....hhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pka X  25 LGEMVTVLSIDGGGIRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTsTGGLLTAMISTPNENNRPFAAAKEIVPFYFEHGPQIFNPSGQILGPKYDGKYLMQVLQEKLGETRVHQALTEVVISSFDIKTNKPVIFTKSNLANSPELDAKMYDISYSTAAAPTYFPPHYFVTNTSNGDEYEFNLVDGAVATVADPALLSISVATRLAQKDPAFASIRSLNYKKMLLLSLGTGTTSEFDKTYTAKEAATWTAVHWMLVIQKMTDAASSYMTDYYLSTAFQALDSKNNYLRVQENALTGTTTEMDDASEANMELLVQVGENLLKKPVSEDNPETYEEALKRFAKLLSDRKKLRA 381
                                    34        44        54        64        74  |     84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       
                                                                               77-MIS
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PKA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PKA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PKA)

(-) Gene Ontology  (7, 7)

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  4pka
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  PAT17_SOLCD | Q8LPW4
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PAT17_SOLCD | Q8LPW4: 1oxw 4pk9 4pkb

(-) Related Entries Specified in the PDB File

1oxw CRYSTAL STRUCTURE OF SEMET PATATIN-17
4pk9 THE CRYSTAL STRUCTURE OF NATIVE PATATIN
4pkb CRYSTAL STRUCTURE OF PATATIN-17 COMPLEXED WITH METHYL ARACHIDONYL FLUOROPHOSPHONATE (MAFP)