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(-) Description

Title :  CRYSTAL STRUCTURE OF THE TMH1-LOCK MUTANT OF THE MATURE FORM OF PLEUROTOLYSIN B
 
Authors :  S. C. Kondos, R. H. P. Law, J. C. Whisstock, M. A. Dunstone
Date :  20 Feb 14  (Deposition) - 18 Feb 15  (Release) - 18 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym./Biol. Unit :  A
Keywords :  Tmh1-Lock, Macpf Domain, Pore-Forming Protein, Pleurtolysin A Component, Toxin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Lukoyanova, S. C. Kondos, I. Farabella, R. H. P. Law, C. F. Reboul, T. T. Caradoc-Davies, B. A. Spicer, O. Kleifeld, D. A. Traore, S. M. Ekkel, I. Voskoboinik, J. A. Trapani, T. Hatfaludi, K. Oliver, E. M. Hotze, R. K. Tweten, J. C. Whisstock, M. Topf, H. R. Saibil, M. A. Dunstone
Conformational Changes During Pore Formation By The Perforin-Related Protein Pleurotolysin
Plos Biol. V. 13 02049 2015
PubMed-ID: 25654333  |  Reference-DOI: 10.1371/JOURNAL.PBIO.1002049

(-) Compounds

Molecule 1 - PLEUROTOLYSIN B
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET3A
    Expression System Strain: BL21(DE3) PLYSS CODON PLUS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: TMH1-LOCK, UNP RESIDUES 49-523
    Gene: MPLYB, PLYB
    Mutation: YES
    Organism Common: OYSTER MUSHROOM
    Organism Scientific: PLEUROTUS OSTREATUS
    Organism Taxid: 5322

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric/Biological Unit (3, 9)
No.NameCountTypeFull Name
1CL6Ligand/IonCHLORIDE ION
2GOL1Ligand/IonGLYCEROL
3SO42Ligand/IonSULFATE ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:124 , THR A:237 , MET A:238 , ASN A:289 , HOH A:799BINDING SITE FOR RESIDUE SO4 A 601
2AC2SOFTWARETHR A:112 , ASN A:128 , SER A:129 , ARG A:165 , HOH A:826BINDING SITE FOR RESIDUE SO4 A 602
3AC3SOFTWAREGLU A:124BINDING SITE FOR RESIDUE CL A 603
4AC4SOFTWARECYS A:221 , ALA A:328 , ALA A:330 , HOH A:823BINDING SITE FOR RESIDUE GOL A 604
5AC5SOFTWAREGLY A:296 , SER A:402BINDING SITE FOR RESIDUE CL A 605
6AC6SOFTWAREGLY A:414 , SER A:415 , HOH A:830BINDING SITE FOR RESIDUE CL A 606
7AC7SOFTWAREGLY A:459 , ARG A:460 , ARG A:508 , HOH A:709 , HOH A:840 , HOH A:853BINDING SITE FOR RESIDUE CL A 607
8AC8SOFTWAREPRO A:505BINDING SITE FOR RESIDUE CL A 608
9AC9SOFTWAREASP A:174 , ASP A:184 , HOH A:855BINDING SITE FOR RESIDUE CL A 609

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:138 -A:221

(-) Cis Peptide Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1Ser A:180 -Gly A:181
2Gln A:335 -Pro A:336
3Gly A:373 -Ala A:374
4Pro A:443 -Pro A:444
5Pro A:499 -Gly A:500

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OV8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OV8)

(-) Exons   (0, 0)

(no "Exon" information available for 4OV8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:465
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh...eeeeee..eeeeeeee........eeee....eeeeeee....hhhhhhh..hhhhhhhhhhhhhhh..............eeeeeeeeeeeeeeeeee............hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.eeeeeeeeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhh........eeeeee.....eeeeeeeee..hhhhh.hhhhhhhhhhhhhhheeeeeeeeee.hhhh..hhhhhhhhhhh.eeeeee.eee...........eee........ee.........eeeeee...........ee.eee.......eee....................hhhhh.ee....eeeeeeeee.......eeeeee..............eeee.............eee....eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ov8 A  53 DTLNDVIQDPTRRNKLINDNNLLKGIIMGRDGPVPSSRELIVRPDTLRAIINNRATIETTTMEAEFTETLMESNYNSASVKVSAPCITANSEYSESSSFKNTETEKSMYTSSRYLFPQGRIDFTTPDSGDVIKLSPQFTSGVQAALAKATGTEKREALQNLFQEYGCVFRTKVHIGGVLSAHTMETFSRSENETEVKQDVKAGLEGAVKGWGGGATAGHGNTQGTITTSQNRKLNVKYIVNGGDYTKIQNTEEWVASTNQSEHWRVIEVTEVTAVADLLPQPIRGQVKDLLKPLLGKWVDVEKVPGLESLPVSVYRPKGAIPAGWFWLGDTADASKALLVKPTLPARSGRNPALTSLHQGSGMTEQPFVDLPQYQYLSTYFGSFAHDTPPGSTLRGLRPDHVLPGRYEMHGDTISTAVYVTRPVDVPFPEDEAFDLKSLVRVKLPGSGNPPKPRSALKKSMVLFD 519
                                    62        72        82        92       102       112       122       132       142       152       162       172       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514     
                                                                                                                                                          181|                                                                                                                                                                                                                                                                                                                                               
                                                                                                                                                           184
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OV8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OV8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OV8)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4OV8)

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  Cis Peptide Bonds
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 Related Entries

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        Q5W9E8_PLEOS | Q5W9E8: 4oej 4v2t 4v3a 4v3m 4v3n

(-) Related Entries Specified in the PDB File

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