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(-) Description

Title :  CRYSTAL STRUCTURE OF PRK1 CATALYTIC DOMAIN IN COMPLEX WITH RO-31-8220
 
Authors :  P. P. Chamberlain, S. Delker, Pagarigan B. , A. Mahmoudi, P. Jackson, M. Abbassian, J. Muir, N. Raheja, B. Cathers
Date :  13 Feb 14  (Deposition) - 27 Aug 14  (Release) - 27 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Prk1, Pkn1, Protein Kinase C Related Kinase 1, Kinase, Protein Kinase, Atp Binding, Phosphorylation, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Chamberlain, S. Delker, B. Pagarigan, A. Mahmoudi, P. Jackson, M. Abbasian, J. Muir, N. Raheja, B. Cathers
Crystal Structures Of Prk1 In Complex With The Clinical Compounds Lestaurtinib And Tofacitinib Reveal Ligand Induce Conformational Changes.
Plos One V. 9 03638 2014
PubMed-ID: 25111382  |  Reference-DOI: 10.1371/JOURNAL.PONE.0103638

(-) Compounds

Molecule 1 - SERINE/THREONINE-PROTEIN KINASE N1
    Chains: A
    EC Number: 2.7.11.13
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Taxid: 7111
    Fragment: UNP RESIDUES 605-942
    Gene: PKN1, PAK1, PKN, PRK1, PRKCL1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PROTEASE-ACTIVATED KINASE 1, PAK-1, PROTEIN KINASE C-LIKE 1, PROTEIN KINASE C-LIKE PKN, PROTEIN KINASE PKN-ALPHA, PROTEIN-KINASE C-RELATED KINASE 1, SERINE-THREONINE PROTEIN KINASE N

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1DRN1Ligand/IonBISINDOLYLMALEIMIDE IX
2SEP1Mod. Amino AcidPHOSPHOSERINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:627 , PHE A:632 , ALA A:648 , VAL A:685 , MET A:701 , GLU A:702 , TYR A:703 , SER A:704 , ASP A:708 , ASP A:750 , ASN A:751 , LEU A:753 , ALA A:763 , ASP A:764 , PHE A:910 , HOH A:1233 , HOH A:1257BINDING SITE FOR RESIDUE DRN A 1001

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:668 -A:768

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu A:883 -Gly A:884

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OTH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OTH)

(-) Exons   (0, 0)

(no "Exon" information available for 4OTH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:306
                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhh.eeeeeeeeee..eeeeeeee.....eeeeeeeehhhhhhh.hhhhhhhhhhhhhhhhh........eeeeee...eeeeeee....eehhhhh.....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee........hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh........hhhhhhhhhhhh.............hhhhhhhhhhhh..hhhhhhh....................hhhhhh..............hhhhhhh.....ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4oth A 612 RKSPLTLEDFKFLAVLGRGHFGKVLLSEFRPSGELFAIKALKKGDIVARDEVESLMCEKRILAAVTSAGHPFLVNLFGCFQTPEHVCFVMEYSAGGDLMLHIHSDVFSEPRAIFYSACVVLGLQFLHEHKIVYRDLKLDNLLLDTEGYVKIADFGLCKTRAVDWWGLGVLLYEMLVGESPFPGDDEEEVFDSIVNDEVRYPRFLSAEAIGIMRRLLRRNPERRLGSSERDAEDVKKQPFFRTLGWEALLARRLPPPFVPTLSGRTDVSNFDEEFTGEAPTLsPPRDARPLTAAEQAAFLDFDFVAG 946
                                   621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       800       810       820       830       840       850       860       870       880       890       900       910       920 |     930       940      
                                                                                                                                                                                       769|                                                                                                                        922-SEP                    
                                                                                                                                                                                        799
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OTH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OTH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OTH)

(-) Gene Ontology  (48, 48)

Asymmetric/Biological Unit(hide GO term definitions)

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    Leu A:883 - Gly A:884   [ RasMol ]  
 

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  4oth
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  PKN1_HUMAN | Q16512
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  2.7.11.13
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PKN1_HUMAN | Q16512: 1cxz 1urf 2rmk 4nkg 4otd 4otg 4oti

(-) Related Entries Specified in the PDB File

4otd 4otg 4oti