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(-) Description

Title :  HR1B DOMAIN FROM PRK1
 
Authors :  D. Owen, P. N. Lowe, D. Nietlispach, C. E. Brosnan, D. Y. Chirgadze, P. J. Parker, T. L. Blundell, H. R. Mott
Date :  29 Oct 03  (Deposition) - 06 Nov 03  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (24x)
Keywords :  Transferase, G-Protein, Hr1 Domain, Kinase, Helical, Coiled Coil, Atp-Binding, Serine/Threonine-Protein Kinase, Phosphorylation (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  D. Owen, P. N. Lowe, D. Nietlispach, C. E. Brosnan, D. Y. Chirgadze, P. J. Parker, T. L. Blundell, H. R. Mott
Molecular Dissection Of The Interaction Between The Small G Proteins Rac1 And Rhoa And Protein Kinase C-Related Kinase 1 (Prk1)
J. Biol. Chem. V. 278 50578 2003
PubMed-ID: 14514689  |  Reference-DOI: 10.1074/JBC.M304313200

(-) Compounds

Molecule 1 - PROTEIN KINASE C-LIKE 1
    ChainsA
    EC Number2.7.1.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPGEX-3X
    Expression System StrainBL21
    Expression System Taxid511693
    FragmentHR1B, RESIDUES 122-199
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymPLK1_HUMAN, PROTEIN-KINASE C-RELATED KINASE 1, PROTEIN KINASE C-LIKE PKN, SERINE-THREONINE PROTEIN KINASE N

 Structural Features

(-) Chains, Units

  
NMR Structure (24x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1URF)

(-) Sites  (0, 0)

(no "Site" information available for 1URF)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1URF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1URF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (2, 2)

NMR Structure (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_042337R185CPKN1_HUMANUnclassified267605306AR185C
2UniProtVAR_042338A197EPKN1_HUMANPolymorphism  ---AA197E

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1URF)

(-) Exons   (2, 2)

NMR Structure (2, 2)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000002427831ENSE00001313986chr19:14544169-14544354186PKN1_HUMAN1-770--
1.3ENST000002427833ENSE00001055608chr19:14551955-14552255301PKN1_HUMAN8-1081010--
1.4ENST000002427834ENSE00000836596chr19:14554282-14554433152PKN1_HUMAN108-158511A:119-158 (gaps)43
1.5ENST000002427835ENSE00000836597chr19:14557238-14557373136PKN1_HUMAN159-204461A:159-19941
1.6ENST000002427836ENSE00000836598chr19:14561130-14561275146PKN1_HUMAN204-252490--
1.7ENST000002427837ENSE00000836599chr19:14561708-14561921214PKN1_HUMAN253-324720--
1.8ENST000002427838ENSE00000836600chr19:14562641-14562835195PKN1_HUMAN324-389660--
1.9ENST000002427839ENSE00000836601chr19:14568843-14568952110PKN1_HUMAN389-425370--
1.10ENST0000024278310ENSE00000836602chr19:14569044-14569187144PKN1_HUMAN426-473480--
1.11ENST0000024278311ENSE00000836603chr19:14574479-1457455476PKN1_HUMAN474-499260--
1.12ENST0000024278312ENSE00000836604chr19:14574640-14574781142PKN1_HUMAN499-546480--
1.13ENST0000024278313ENSE00000836605chr19:14574872-1457496594PKN1_HUMAN546-577320--
1.14ENST0000024278314ENSE00000836606chr19:14578377-1457845377PKN1_HUMAN578-603260--
1.15ENST0000024278315ENSE00000836607chr19:14578530-1457860576PKN1_HUMAN603-628260--
1.16ENST0000024278316ENSE00000836608chr19:14578688-1457877992PKN1_HUMAN629-659310--
1.17ENST0000024278317ENSE00000836609chr19:14580153-14580329177PKN1_HUMAN659-718600--
1.18ENST0000024278318ENSE00000836610chr19:14580564-1458062663PKN1_HUMAN718-739220--
1.19ENST0000024278319ENSE00001648194chr19:14580724-1458080077PKN1_HUMAN739-765270--
1.20ENST0000024278320ENSE00001599313chr19:14580975-14581117143PKN1_HUMAN765-812480--
1.21ENST0000024278321ENSE00000836613chr19:14581387-14581494108PKN1_HUMAN813-848360--
1.22ENST0000024278322ENSE00000836614chr19:14581583-1458166381PKN1_HUMAN849-875270--
1.23aENST0000024278323aENSE00001826047chr19:14582393-14582671279PKN1_HUMAN876-942670--

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:81
 aligned with PKN1_HUMAN | Q16512 from UniProtKB/Swiss-Prot  Length:942

    Alignment length:84
                                   125       135       145       155       165       175       185       195    
           PKN1_HUMAN   116 GGPTCSATNLSRVAGLEKQLAIELKVKQGAENMIQTYSNGSTKDRKLLLTAQQMLQDSKTKIDIIRMQLRRALQAGQLENQAAP 199
               SCOP domains d1u   rfa_ A: Protein kinase c-like 1, pkn/prk1                                      SCOP domains
               CATH domains 1ur   fA00 A:119-199  [code=1.10.287.160, no name defined]                           CATH domains
               Pfam domains ----------HR1-1urfA01 A:126-198                                                    - Pfam domains
         Sec.struct. author ...---...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------C-----------E-- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------ PROSITE
               Transcript 1 Exon 1.4  PDB: A:119-158 (gaps)            Exon 1.5  PDB: A:159-199 UniProt: 159-204 Transcript 1
                 1urf A 119 GIP---ATNLSRVAGLEKQLAIELKVKQGAENMIQTYSNGSTKDRKLLLTAQQMLQDSKTKIDIIRMQLRRALQADQLENQAAP 199
                              |   |125       135       145       155       165       175       185       195    
                              | 122                                                                             
                            121                                                                                 

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (1, 1)

NMR Structure

(-) Pfam Domains  (1, 1)

NMR Structure

(-) Gene Ontology  (48, 48)

NMR Structure(hide GO term definitions)
Chain A   (PKN1_HUMAN | Q16512)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0017049    GTP-Rho binding    Interacting selectively and non-covalently with the GTP-bound form of the Rho protein.
    GO:0048365    Rac GTPase binding    Interacting selectively and non-covalently with Rac protein, any member of the Rac subfamily of the Ras superfamily of monomeric GTPases.
    GO:0050681    androgen receptor binding    Interacting selectively and non-covalently with an androgen receptor.
    GO:0003682    chromatin binding    Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
    GO:0042393    histone binding    Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity.
    GO:0042826    histone deacetylase binding    Interacting selectively and non-covalently with the enzyme histone deacetylase.
    GO:0035402    histone kinase activity (H3-T11 specific)    Catalysis of the transfer of a phosphate group to the threonine-11 residue of the N-terminal tail of histone H3.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0030374    ligand-dependent nuclear receptor transcription coactivator activity    The function of a transcription cofactor that activates transcription in conjuction with a ligand-dependent nuclear receptor from a RNA polymerase II promoter; does not bind DNA itself.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004697    protein kinase C activity    Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein. This reaction requires diacylglycerol.
    GO:0005080    protein kinase C binding    Interacting selectively and non-covalently with protein kinase C.
    GO:0004672    protein kinase activity    Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
    GO:0004674    protein serine/threonine kinase activity    Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0001783    B cell apoptotic process    Any apoptotic process in a B cell, a lymphocyte of B lineage with the phenotype CD19-positive and capable of B cell mediated immunity.
    GO:0001782    B cell homeostasis    The process of regulating the proliferation and elimination of B cells such that the total number of B cells within a whole or part of an organism is stable over time in the absence of an outside stimulus.
    GO:0007257    activation of JUN kinase activity    The initiation of the activity of the inactive enzyme JUN kinase (JNK).
    GO:0010631    epithelial cell migration    The orderly movement of an epithelial cell from one site to another, often during the development of a multicellular organism.
    GO:0035407    histone H3-T11 phosphorylation    The modification of histone H3 by the addition of an phosphate group to a threonine residue at position 11 of the histone.
    GO:0006972    hyperosmotic response    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a hyperosmotic environment, i.e. an environment with a higher concentration of solutes than the organism or cell.
    GO:0030889    negative regulation of B cell proliferation    Any process that stops, prevents or reduces the rate or extent of B cell proliferation.
    GO:0006469    negative regulation of protein kinase activity    Any process that stops, prevents, or reduces the frequency, rate or extent of protein kinase activity.
    GO:0001933    negative regulation of protein phosphorylation    Any process that stops, prevents or reduces the rate of addition of phosphate groups to amino acids within a protein.
    GO:0018105    peptidyl-serine phosphorylation    The phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.
    GO:2000145    regulation of cell motility    Any process that modulates the frequency, rate or extent of cell motility.
    GO:0002634    regulation of germinal center formation    Any process that modulates the frequency, rate, or extent of germinal center formation.
    GO:0002637    regulation of immunoglobulin production    Any process that modulates the frequency, rate, or extent of immunoglobulin production.
    GO:0006357    regulation of transcription from RNA polymerase II promoter    Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0003014    renal system process    A organ system process carried out by any of the organs or tissues of the renal system. The renal system maintains fluid balance, and contributes to electrolyte balance, acid/base balance, and disposal of nitrogenous waste products. In humans, the renal system comprises a pair of kidneys, a pair of ureters, urinary bladder, urethra, sphincter muscle and associated blood vessels; in other species, the renal system may comprise related structures (e.g., nephrocytes and malpighian tubules in Drosophila).
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0048536    spleen development    The process whose specific outcome is the progression of the spleen over time, from its formation to the mature structure. The spleen is a large vascular lymphatic organ composed of white and red pulp, involved both in hemopoietic and immune system functions.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0032154    cleavage furrow    The cleavage furrow is a plasma membrane invagination at the cell division site. The cleavage furrow begins as a shallow groove and eventually deepens to divide the cytoplasm.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005768    endosome    A vacuole to which materials ingested by endocytosis are delivered.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0030496    midbody    A thin cytoplasmic bridge formed between daughter cells at the end of cytokinesis. The midbody forms where the contractile ring constricts, and may persist for some time before finally breaking to complete cytokinesis.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0043234    protein complex    A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PKN1_HUMAN | Q165121cxz 2rmk 4nkg 4otd 4otg 4oth 4oti

(-) Related Entries Specified in the PDB File

1cxz CRYSTAL STRUCTURE OF HUMAN RHOA COMPLEXED WITH THE EFFECTORDOMAIN OF THE PROTEIN KINASE PKN/PRK1