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(-) Description

Title :  THE CRYSTAL STRUCTURE OF A SOLUTE-BINDING PROTEIN (N280D MUTANT) FROM ANABAENA VARIABILIS ATCC 29413 IN COMPLEX WITH LEUCINE
 
Authors :  K. Tan, H. Li, R. Jedrzejczak, A. Joachimiak, Midwest Center For Str Genomics (Mcsg)
Date :  15 Jan 14  (Deposition) - 29 Jan 14  (Release) - 29 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.10
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Structural Genomics, Psi-Biology, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  K. Tan, H. Li, R. Jedrzejczak, A. Joachimiak
The Crystal Structure Of A Solute-Binding Protein (N280D Mutant) From Anabaena Variabilis Atcc 29413 In Complex With Leucine
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - AMINO ACID/AMIDE ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN, HAAT FAMILY
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPMCSG68
    Expression System StrainBL21(DE3)MAGIC
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    MutationYES
    Organism ScientificANABAENA VARIABILIS
    Organism Taxid240292
    StrainATCC 29413

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A 
Biological Unit 2 (1x) B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 8)

Asymmetric Unit (4, 8)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2LEU2Mod. Amino AcidLEUCINE
3MG2Ligand/IonMAGNESIUM ION
4MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2LEU1Mod. Amino AcidLEUCINE
3MG-1Ligand/IonMAGNESIUM ION
4MSE1Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2LEU1Mod. Amino AcidLEUCINE
3MG-1Ligand/IonMAGNESIUM ION
4MSE1Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:130 , LEU A:131 , SER A:132 , SER A:153 , ASN A:154 , THR A:155 , PHE A:204 , ASP A:280 , GLY A:281 , PHE A:331 , HOH A:694BINDING SITE FOR RESIDUE LEU A 501
2AC2SOFTWAREPRO A:160 , GLY A:163 , VAL A:166 , ILE A:388 , HOH A:678BINDING SITE FOR RESIDUE MG A 502
3AC3SOFTWAREASP A:233 , THR A:234 , ASP A:235 , HOH A:910 , THR B:234 , HOH B:795BINDING SITE FOR RESIDUE CL A 503
4AC4SOFTWARETHR B:130 , LEU B:131 , SER B:132 , SER B:153 , ASN B:154 , THR B:155 , PHE B:204 , ASP B:280 , GLY B:281 , PHE B:331 , HOH B:622BINDING SITE FOR RESIDUE LEU B 501
5AC5SOFTWAREPRO B:160 , GLY B:163 , VAL B:166 , ILE B:388 , HOH B:629BINDING SITE FOR RESIDUE MG B 502
6AC6SOFTWAREASP B:233 , THR B:234 , ASP B:235 , HOH B:897 , HOH B:944BINDING SITE FOR RESIDUE CL B 503

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:291 -A:295
2B:291 -B:295

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Gly A:128 -Pro A:129
2Gly B:128 -Pro B:129

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OG2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OG2)

(-) Exons   (0, 0)

(no "Exon" information available for 4OG2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:365
                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains d4og2a_ A: automated matches                                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.......hhhhhhhhhhhhhhhhhhhhhh.......eeeee.....hhhhhhhhhhhhhhh.....ee...hhhhhhhhhhhhhhhh..eee.......hhhhh..eee...hhhhhhhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhhhhhhhh..eeeeeeee......hhhhhhhhhh....eeeee.hhhhhhhhhhhhhhh....eeee.hhhhhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeee..eeeee.....ee....eeeeeee......eeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4og2 A  53 NTIPIGIALAQTSNVALLGQEQVAGAKIAEKYFNDKGGVNGTPIKLIFQDTAGDEAGTINAFQTLINKDKVVGIVGPTLSQQAFSANPIAERAKVPVVGPSNTAKGIPEIGDYVARVSAPVSVVAPNSVKAALKQNPNIKKVAVFFAQNDAFSKSETEIFQQTVKDQGLELVTVQKFQTTDTDFQSQATNAINLKPDLVIISGLAADGGNLVRQLRELGYQGAIIGGDGLNTSNVFAVCKALCDGVLIAQAYSPEYTGEINKAFRQAYVDQYKKEPPQFSAQAFAAVQVYVESLKALDTKNKVSKIQLPELRTELNKQLLTGKYNTPLGEISFTPIGEVVQKDFYVAQIKmEKDGSQGKFTFLKL 501
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402|      412   ||
                                                                                                                                                                                                                                                                                                                                                                                        403-MSE      416|
                                                                                                                                                                                                                                                                                                                                                                                                      501

Chain B from PDB  Type:PROTEIN  Length:365
                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains d4og2b_ B: automated matches                                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.......hhhhhhhhhhhhhhhhhhhhhh.......eeeee.....hhhhhhhhhhhhhhh.....ee...hhhhhhhhhhhhhhhh..eee.......hhhhh..eee...hhhhhhhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhhhhhhhhh.eeeeeeee......hhhhhhhhhh....eeeee.hhhhhhhhhhhhhhh....eeee.hhhhhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeee..eeeee.....ee....eeeeeee......eeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4og2 B  53 NTIPIGIALAQTSNVALLGQEQVAGAKIAEKYFNDKGGVNGTPIKLIFQDTAGDEAGTINAFQTLINKDKVVGIVGPTLSQQAFSANPIAERAKVPVVGPSNTAKGIPEIGDYVARVSAPVSVVAPNSVKAALKQNPNIKKVAVFFAQNDAFSKSETEIFQQTVKDQGLELVTVQKFQTTDTDFQSQATNAINLKPDLVIISGLAADGGNLVRQLRELGYQGAIIGGDGLNTSNVFAVCKALCDGVLIAQAYSPEYTGEINKAFRQAYVDQYKKEPPQFSAQAFAAVQVYVESLKALDTKNKVSKIQLPELRTELNKQLLTGKYNTPLGEISFTPIGEVVQKDFYVAQIKmEKDGSQGKFTFLKL 501
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402|      412   ||
                                                                                                                                                                                                                                                                                                                                                                                        403-MSE      416|
                                                                                                                                                                                                                                                                                                                                                                                                      501

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OG2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OG2)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q3MFZ5_ANAVT | Q3MFZ54nqr 4nv3 4oat 4obb 4otz 4qym 4rdc 4rv5

(-) Related Entries Specified in the PDB File

4nqr N280D MUTANT IN COMPLEX WITH ALANINE
4nv3 N280D MUTANT IN COMPLEX WITH VALINE
4oat N280D MUTANT IN COMPLEX WITH ISOLEUCINE
4obb WILD TYPE IN COMPLEX WITH (3S)-3-METHYL-2-OXOPENTANOIC ACID RELATED ID: MCSG-APC110063 RELATED DB: TARGETTRACK