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(-) Description

Title :  THE CRYSTAL STRUCTURE OF A SOLUTE-BINDING PROTEIN (N280D MUTANT) FROM ANABAENA VARIABILIS ATCC 29413 IN COMPLEX WITH PROLINE
 
Authors :  K. Tan, H. Li, R. Jedrzejczak, A. Joachimiak, Midwest Center For Str Genomics (Mcsg)
Date :  18 Sep 14  (Deposition) - 01 Oct 14  (Release) - 01 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Psi-Biology, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Tan, H. Li, R. Jedrzejczak, A. Joachimiak
The Crystal Structure Of A Solute-Binding Protein (N280D Mutant) From Anabaena Variabilis Atcc 29413 In Complex With Proline.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - AMINO ACID/AMIDE ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN, HAAT FAMILY
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG68
    Expression System Strain: BL21(DE3)MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: AVA_0465
    Mutation: YES
    Organism Scientific: ANABAENA VARIABILIS
    Organism Taxid: 240292
    Strain: ATCC 29413

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 5)

Asymmetric/Biological Unit (5, 5)
No.NameCountTypeFull Name
1FMT1Ligand/IonFORMIC ACID
2GOL1Ligand/IonGLYCEROL
3MG1Ligand/IonMAGNESIUM ION
4MSE1Mod. Amino AcidSELENOMETHIONINE
5PRO1Mod. Amino AcidPROLINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:70 , LEU A:131 , SER A:132 , SER A:153 , ASN A:154 , THR A:155 , PHE A:204 , ASP A:280 , PHE A:331 , HOH A:740BINDING SITE FOR RESIDUE PRO A 501
2AC2SOFTWAREPRO A:160 , GLY A:163 , VAL A:166 , ILE A:388 , HOH A:611 , HOH A:728BINDING SITE FOR RESIDUE MG A 502
3AC3SOFTWAREGLN A:72 , GLU A:73 , ALA A:76 , ASN A:286 , TYR A:320 , THR A:386 , FMT A:504 , HOH A:898BINDING SITE FOR RESIDUE GOL A 503
4AC4SOFTWAREGLN A:72 , THR A:386 , PRO A:387 , ILE A:388 , GOL A:503 , HOH A:940BINDING SITE FOR RESIDUE FMT A 504

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:291 -A:295

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly A:128 -Pro A:129

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RDC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RDC)

(-) Exons   (0, 0)

(no "Exon" information available for 4RDC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:365
                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.....hhhhhhhhhhhhhhhhhhhhhh.......eeeeeee...hhhhhhhhhhhhhhh.....ee...hhhhhhhhhhhhhhhh..eee.......hhhhh..eee...hhhhhhhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhhhhhhhh..eeeeeeee......hhhhhhhhhh....eeeee.hhhhhhhhhhhhhhh....eeee.hhhhhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eee..eeeee.....ee....eeeeeeee....eeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rdc A  53 NTIPIGIALAQTSNVALLGQEQVAGAKIAEKYFNDKGGVNGTPIKLIFQDTAGDEAGTINAFQTLINKDKVVGIVGPTLSQQAFSANPIAERAKVPVVGPSNTAKGIPEIGDYVARVSAPVSVVAPNSVKAALKQNPNIKKVAVFFAQNDAFSKSETEIFQQTVKDQGLELVTVQKFQTTDTDFQSQATNAINLKPDLVIISGLAADGGNLVRQLRELGYQGAIIGGDGLNTSNVFAVCKALCDGVLIAQAYSPEYTGEINKAFRQAYVDQYKKEPPQFSAQAFAAVQVYVESLKALDTKNKVSKIQLPELRTELNKQLLTGKYNTPLGEISFTPIGEVVQKDFYVAQIKmEKDGSQGKFTFLKP 501
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402|      412   ||
                                                                                                                                                                                                                                                                                                                                                                                        403-MSE      416|
                                                                                                                                                                                                                                                                                                                                                                                                      501
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RDC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RDC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RDC)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q3MFZ5_ANAVT | Q3MFZ5: 4nqr 4nv3 4oat 4obb 4og2 4otz 4qym 4rv5

(-) Related Entries Specified in the PDB File

4nbb WT IN COMPLEX WITH (3S)-3-METHYL-2-OXOPENTANOIC ACID
4nqr N280D IN COMPLEX WITH ALANINE
4nv3 N280D IN COMPLEX WITH VALINE
4oat N280D IN COMPLEX WITH ISOLEUCINE
4og2 N280D IN COMPLEX WITH LEUCINE
4otz N280D IN COMPLEX WITH CYSTEIN
4qym N280D IN COMPLEX WITH METHIONINE RELATED ID: MCSG-APC110063 RELATED DB: TARGETTRACK