4NV3 - JenaLib

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Title :   THE CRYSTAL STRUCTURE OF A SOLUTE-BINDING PROTEIN (N280D MUTANT) FROM ANABAENA VARIABILIS ATCC 29413 IN COMPLEX WITH VALINE.

Authors :   K. Tan, H. Li, R. Jedrzejczak, A. Joachimiak, Midwest Center For Str Genomics (Mcsg)

Date :   04 Dec 13 (Deposition) - 11 Dec 13 (Release) - 11 Dec 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.09

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Structural Genomics, Psi-Biology, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. Tan, H. Li, R. Jedrzejczak, A. Joachimiak
The Crystal Structure Of A Solute-Binding Protein (N280D Mutant) From Anabaena Variabilis Atcc 29413 In Complex With Valine.
To Be Published
PubMed: search

Molecule 1 - AMINO ACID/AMIDE ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN, HAAT FAMILY
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG68
	Expression System Strain	:	BL21(DE3)MAGIC
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	ANABAENA VARIABILIS, AVA_0465SG
	Mutation	:	YES
	Organism Scientific	:	ANABAENA VARIABILIS
	Organism Taxid	:	240292
	Strain	:	ATCC 29413

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 7)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	MG	2	Ligand/Ion	MAGNESIUM ION
3	MSE	2	Mod. Amino Acid	SELENOMETHIONINE
4	VAL	2	Mod. Amino Acid	VALINE

Biological Unit 1 (3, 3)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	MSE	1	Mod. Amino Acid	SELENOMETHIONINE
4	VAL	1	Mod. Amino Acid	VALINE

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	MSE	1	Mod. Amino Acid	SELENOMETHIONINE
4	VAL	1	Mod. Amino Acid	VALINE

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	THR A:130 , LEU A:131 , SER A:132 , SER A:153 , ASN A:154 , THR A:155 , PHE A:204 , ASP A:280 , GLY A:281 , HOH A:631	BINDING SITE FOR RESIDUE VAL A 501
2	AC2	SOFTWARE	PRO A:160 , GLY A:163 , VAL A:166 , ILE A:388 , HOH A:646	BINDING SITE FOR RESIDUE MG A 502
3	AC3	SOFTWARE	ASN A:283 , GLN A:302 , PRO A:329 , GLN A:330 , PHE A:412 , HOH A:679	BINDING SITE FOR RESIDUE ACT A 503
4	AC4	SOFTWARE	THR B:130 , LEU B:131 , SER B:132 , SER B:153 , ASN B:154 , THR B:155 , PHE B:204 , ASP B:280 , GLY B:281 , HOH B:620	BINDING SITE FOR RESIDUE VAL B 501
5	AC5	SOFTWARE	PRO B:160 , GLY B:163 , VAL B:166 , ILE B:388 , HOH B:770	BINDING SITE FOR RESIDUE MG B 502

Asymmetric Unit

No.	Residues
1	A:291	-	A:295
2	B:291	-	B:295

Asymmetric Unit

No.	Residues
1	Gly A:128	-	Pro A:129
2	Gly B:128	-	Pro B:129

(no "SAP(SNP)/Variant" information available for 4NV3)

(no "PROSITE Motif" information available for 4NV3)

(no "Exon" information available for 4NV3)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:365
                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains d4nv3a_ A: automated matches                                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.......hhhhhhhhhhhhhhhhhhhhhh.......eeeee.....hhhhhhhhhhhhhhh.....ee...hhhhhhhhhhhhhhhh..eee.......hhhhh..eee...hhhhhhhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhhhhhhhh..eeeeeeee......hhhhhhhhhh....eeeee.hhhhhhhhhhhhhhh....eeee.hhhhhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeee..eeeee.....ee....eeeeeee......eeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nv3 A  53 NTIPIGIALAQTSNVALLGQEQVAGAKIAEKYFNDKGGVNGTPIKLIFQDTAGDEAGTINAFQTLINKDKVVGIVGPTLSQQAFSANPIAERAKVPVVGPSNTAKGIPEIGDYVARVSAPVSVVAPNSVKAALKQNPNIKKVAVFFAQNDAFSKSETEIFQQTVKDQGLELVTVQKFQTTDTDFQSQATNAINLKPDLVIISGLAADGGNLVRQLRELGYQGAIIGGDGLNTSNVFAVCKALCDGVLIAQAYSPEYTGEINKAFRQAYVDQYKKEPPQFSAQAFAAVQVYVESLKALDTKNKVSKIQLPELRTELNKQLLTGKYNTPLGEISFTPIGEVVQKDFYVAQIKmEKDGSQGKFTFLKV 501
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402|      412   ||
                                                                                                                                                                                                                                                                                                                                                                                        403-MSE      416|
                                                                                                                                                                                                                                                                                                                                                                                                      501

Chain B from PDB  Type:PROTEIN  Length:365
                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains d4nv3b_ B: automated matches                                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.......hhhhhhhhhhhhhhhhhhhhhh.......eeeee.....hhhhhhhhhhhhhhh.....ee...hhhhhhhhhhhhhhhh..eee.......hhhhh..eee...hhhhhhhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhhhhhhhh..eeeeeeee......hhhhhhhhhh....eeeee.hhhhhhhhhhhhhhh....eeee.hhhhhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeee..eeeee.....ee....eeeeeee......eeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nv3 B  53 NTIPIGIALAQTSNVALLGQEQVAGAKIAEKYFNDKGGVNGTPIKLIFQDTAGDEAGTINAFQTLINKDKVVGIVGPTLSQQAFSANPIAERAKVPVVGPSNTAKGIPEIGDYVARVSAPVSVVAPNSVKAALKQNPNIKKVAVFFAQNDAFSKSETEIFQQTVKDQGLELVTVQKFQTTDTDFQSQATNAINLKPDLVIISGLAADGGNLVRQLRELGYQGAIIGGDGLNTSNVFAVCKALCDGVLIAQAYSPEYTGEINKAFRQAYVDQYKKEPPQFSAQAFAAVQVYVESLKALDTKNKVSKIQLPELRTELNKQLLTGKYNTPLGEISFTPIGEVVQKDFYVAQIKmEKDGSQGKFTFLKV 501
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402|      412   ||
                                                                                                                                                                                                                                                                                                                                                                                        403-MSE      416|
                                                                                                                                                                                                                                                                                                                                                                                                      501

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

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Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

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Organisms( (-)

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Class: Alpha and beta proteins (a/b) (23833)

Fold: Periplasmic binding protein-like I (179)

Superfamily: Periplasmic binding protein-like I (179)

Family: automated matches (65)

Protein domain: automated matches (65)

Anabaena variabilis [TaxId: 240292] (6)

1a	d4nv3a_	A:
1b	d4nv3b_	B:

(no "CATH Domain" information available for 4NV3)

(no "Pfam Domain" information available for 4NV3)

Asymmetric Unit(hide GO term definitions)

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		AC5	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Gly A:128 - Pro A:129	[ RasMol ]
		Gly B:128 - Pro B:129	[ RasMol ]

Biological Units
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4nor	N280D MUTANT IN COMPLEX WITH ALANINE. RELATED ID: MCSG-APC110063 RELATED DB: TARGETTRACK

Description

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Ligands, Modified Residues, Ions (4, 7)

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SS Bonds (2, 2)

Cis Peptide Bonds (2, 2)

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