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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN GLUTAMINASE IN COMPLEX DON
 
Authors :  K. Thangavelu, J. Sivaraman
Date :  24 Dec 13  (Deposition) - 16 Apr 14  (Release) - 16 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Thangavelu, Q. Y. Chong, B. C. Low, J. Sivaraman
Structural Basis For The Active Site Inhibition Mechanism O Human Kidney-Type Glutaminase (Kga)
Sci Rep V. 4 3827 2014
PubMed-ID: 24451979  |  Reference-DOI: 10.1038/SREP03827

(-) Compounds

Molecule 1 - GLUTAMINASE KIDNEY ISOFORM, MITOCHONDRIAL
    Chains: A
    EC Number: 3.5.1.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 221-531
    Gene: GLS, GLS1, KIAA0838
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: GLS, K-GLUTAMINASE, L-GLUTAMINE AMIDOHYDROLASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1ONL1Ligand/Ion5-OXO-L-NORLEUCINE
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1ONL4Ligand/Ion5-OXO-L-NORLEUCINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:249 , GLN A:285 , SER A:286 , ASN A:335 , GLU A:381 , ASN A:388 , TYR A:414 , TYR A:466 , GLY A:483 , VAL A:484BINDING SITE FOR RESIDUE ONL A 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4O7D)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4O7D)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4O7D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4O7D)

(-) Exons   (0, 0)

(no "Exon" information available for 4O7D)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:313
                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhh....ee...hhhhhh......eeeeee....eeeee.....ee...hhhhhhhhhhhhhhhhhhhh...........................hhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.....eehhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhheeehhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhh...eee....eeeeee...eeeeee..ee.....hhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o7d A 219 SMIPDFMSFTSHIDELYESAKKQSGGKVADYIPQLAKFSPDLWGVSVCTVDGQRHSTGDTKVPFCLQSCVKPLKYAIAVNDLGTEYVHRYVGKEPSGLRFNKLFLNEDDKPHNPMVNAGAIVVTSLIKQGVNNAEKFDYVMQFLNKMAGNEYVGFSNATFQSERESGDRNFAIGYYLKEKKCFPEGTDMVGILDFYFQLCSIEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLSLMHSCGMYDFSGQFAFHVGLPAKSGVAGGILLVVPNVMGMMCWSPPLDKMGNSVKGIHFCHDLVSLCNFHNYD 531
                                   228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4O7D)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4O7D)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4O7D)

(-) Gene Ontology  (16, 16)

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  4o7d
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  3.5.1.2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GLSK_HUMAN | O94925: 3czd 3unw 3uo9 3voy 3voz 3vp0 3vp1 3vp2 3vp3 3vp4 5d3o 5fi2 5fi6 5fi7 5hl1 5i94 5jyo 5jyp 5u0i 5u0j 5uqe

(-) Related Entries Specified in the PDB File

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