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(-) Description

Title :  CRYSTAL STRUCTURE OF FULL LENGTH HUMAN GLUTAMINASE C EXPRESSED IN E.COLI
 
Authors :  Q. Huang
Date :  06 Aug 15  (Deposition) - 23 Sep 15  (Release) - 23 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.79
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Glutaminase C, Gac, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Q. Huang
Crystal Structure Of Full Length Human Glutaminase C Expressed In E. Coli
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GLUTAMINASE KIDNEY ISOFORM, MITOCHONDRIAL
    Chains: A, B
    EC Number: 3.5.1.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSUMO
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: GLS, GLS1, KIAA0838
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: GLS,K-GLUTAMINASE,L-GLUTAMINE AMIDOHYDROLASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5D3O)

(-) Sites  (0, 0)

(no "Site" information available for 5D3O)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5D3O)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5D3O)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5D3O)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5D3O)

(-) Exons   (0, 0)

(no "Exon" information available for 5D3O)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:391
                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh...eeehhhhhhhhhhh.....hhhhhhhhhhhhh..eeehhhhhhhhh.hhhhhhhhhh......hhhhhhhhhhhhhhhhhh....ee...........eeeeee....eeeee.....ee...hhhhhhhhhhhhhhhhhhhhhhh..................hhhhhhhhhh......hhhhhhhhhhhhhhhhh....eeehhhhhhhhhh.hhhhhhhhhhhhhh.......hhhhhhhhhhhhhheeehhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhh...eee....eeeeee...eeeeee..ee.....hhhhhhhhhhhhhhh..................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5d3o A 143 SLEDLLFYTIAEQEKIPVHKFITALKSTGLRTSDPRLKECMDMLRLTVMLDKDLFKKCVQSNIVLLTQAFRRKFVIPDFMSFTSHIDELYESAKKQSGGKVADYAKFSPDLWGVSVCTADGQRHSTGDTKVPFCLQSCVKPLKYAIAVNDLGTEYVHRYVGKEPSLFLNEDDKPHNPMVNAGAIVVTSLIKQGVNNAEKFDYVMQFLNKMAGNEYVGFSNATFQSERESGDRNFAIGYYLKEKKCFPEGTDMVGILDFYFQLCSIEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLSLMHSCGMYDFSGQFAFHVGLPAKSGVAGGILLVVPNVMGMMCWSPPLDKMGNSVKGIHFCHDLVSLCNFHNYDNLRHFAKKLDPRREG 551
                                   152 ||    163       173       183      |200       210       220       230       240       250   ||  264       274       284       294       304       314    || 330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550 
                                     154|                               190|                                                     254|                                                         319|                                                                                                                                                                                                                                 
                                      156                                198                                                      259                                                          326                                                                                                                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:389
                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh....hhhhhhhhhhhh.....hhhhhhhhhhhh.....hhhhhhhhhh.hhhhhhhhhh......hhhhhhhhhhhhhhhhhhh................eeeeee....eeeee.....ee.hhhhhhhhhhhhhhhhhhhhhh.....................hhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.....eehhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhheeehhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhh...eee....eeeeee...eeeeee.........hhhhhhhhhhhhhhh..................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5d3o B 143 SLEDLLFYTIAEKIPVHKFITALKSTGLRTSDPRLKECMDMLRLTVMLDKDLFKKCVQSNIVLLTQAFRRKFVIPDFMSFTSHIDELYESAKKQSGGKVADYAKFSPDLWGVSVCTADGQRHSTGDTKVPFCLQSCVKPLKYAIAVNDLGTEYVHRYVGKEPSLFLNEDDKPHNPMVNAGAIVVTSLIKQGVNNAEKFDYVMQFLNKMAGNEYVGFSNATFQSERESGDRNFAIGYYLKEKKCFPEGTDMVGILDFYFQLCSIEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLSLMHSCGMYDFSGQFAFHVGLPAKSGVAGGILLVVPNVMGMMCWSPPLDKMGNSVKGIHFCHDLVSLCNFHNYDNLRHFAKKLDPRREG 551
                                   152 ||    165       175       185    || 202       212       222       232       242       252 ||    266       276       286       296       306       316  ||   332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542         
                                     154|                             190|                                                     254|                                                         319|                                                                                                                                                                                                                                 
                                      158                              198                                                      259                                                          326
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5D3O)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5D3O)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5D3O)

(-) Gene Ontology  (16, 16)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GLSK_HUMAN | O94925: 3czd 3unw 3uo9 3voy 3voz 3vp0 3vp1 3vp2 3vp3 3vp4 4o7d 5fi2 5fi6 5fi7 5hl1 5i94 5jyo 5jyp 5u0i 5u0j 5uqe

(-) Related Entries Specified in the PDB File

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