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(-) Description

Title :  CRYSTAL STRUCTURE OF THE PH0671 PROTEIN FROM PYROCOCCUS HORIKOSHII OT3
 
Authors :  H. Mizutani, N. Kunishima, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  04 Feb 05  (Deposition) - 22 Feb 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Mizutani, N. Kunishima
Crystal Structure Of The Ph0671 Protein From Pyrococcus Horikoshii Ot3
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN PH0671
    Chains: A, B, C
    EC Number: 2.5.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Strain: BL21-CODONPLUS (DE3)-RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: PYROCOCCUS HORIKOSHII
    Organism Taxid: 70601
    Strain: OT3
    Synonym: COBALAMIN ADENOSYLTRANSFERASE

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1MG2Ligand/IonMAGNESIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:151 , HOH A:1211 , HOH A:1231 , HOH A:1253 , HOH A:1254 , HOH A:1268BINDING SITE FOR RESIDUE MG A 1201
2AC2SOFTWAREASP C:151 , HOH C:1205 , HOH C:1223 , HOH C:1225 , HOH C:1263BINDING SITE FOR RESIDUE MG C 1202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1WY1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1WY1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1WY1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1WY1)

(-) Exons   (0, 0)

(no "Exon" information available for 1WY1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:142
 aligned with O58404_PYRHO | O58404 from UniProtKB/TrEMBL  Length:172

    Alignment length:142
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161  
         O58404_PYRHO    22 WKDSPIIEANGTLDELTSFIGEAKHYVDEEMKGILEEIQNDIYKIMGEIGSKGKIEGISEERIKWLEGLISRYEEMVNLKSFVLPGGTLESAKLDVCRTIARRAERKVATVLREFGIGKEALVYLNRLSDLLFLLARVIEIE 163
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 1wy1A00 A:22-163  [code=1.20.1200.10, no name defined]                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wy1 A  22 WKDSPIIEANGTLDELTSFIGEAKHYVDEEMKGILEEIQNDIYKIMGEIGSKGKIEGISEERIKWLEGLISRYEEMVNLKSFVLPGGTLESAKLDVCRTIARRAERKVATVLREFGIGKEALVYLNRLSDLLFLLARVIEIE 163
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161  


Chain B from PDB  Type:PROTEIN  Length:143
 aligned with O58404_PYRHO | O58404 from UniProtKB/TrEMBL  Length:172

    Alignment length:144
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163    
         O58404_PYRHO    24 DSPIIEANGTLDELTSFIGEAKHYVDEEMKGILEEIQNDIYKIMGEIGSKGKIEGISEERIKWLEGLISRYEEMVNLKSFVLPGGTLESAKLDVCRTIARRAERKVATVLREFGIGKEALVYLNRLSDLLFLLARVIEIEKNKL 167
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 1wy1B00 B:24-167  [code=1.20.1200.10, no name defined]                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh...-........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1wy1 B  24 DSPIIEANGTLDELTSFIGEAKHYVDEEMKGILEEIQNDIYKIMGEIGSKGKIEGISEERIKWLEGLISRYEEMVN-KSFVLPGGTLESAKLDVCRTIARRAERKVATVLREFGIGKEALVYLNRLSDLLFLLARVIEIEKNKL 167
                                    33        43        53        63        73        83        93     | 103       113       123       133       143       153       163    
                                                                                                      99 |                                                                  
                                                                                                       101                                                                  


Chain C from PDB  Type:PROTEIN  Length:138
 aligned with O58404_PYRHO | O58404 from UniProtKB/TrEMBL  Length:172

    Alignment length:138
                                    34        44        54        64        74        84        94       104       114       124       134       144       154        
         O58404_PYRHO    25 SPIIEANGTLDELTSFIGEAKHYVDEEMKGILEEIQNDIYKIMGEIGSKGKIEGISEERIKWLEGLISRYEEMVNLKSFVLPGGTLESAKLDVCRTIARRAERKVATVLREFGIGKEALVYLNRLSDLLFLLARVIEI 162
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 1wy1C00 C:25-162  [code=1.20.1200.10, no name defined]                                                                                     CATH domains
           Pfam domains (1) Cob_adeno_trans-1wy1C01 C:25-161                                                                                                         - Pfam domains (1)
           Pfam domains (2) Cob_adeno_trans-1wy1C02 C:25-161                                                                                                         - Pfam domains (2)
           Pfam domains (3) Cob_adeno_trans-1wy1C03 C:25-161                                                                                                         - Pfam domains (3)
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1wy1 C  25 SPIIEANGTLDELTSFIGEAKHYVDEEMKGILEEIQNDIYKIMGEIGSKGKIEGISEERIKWLEGLISRYEEMVNLKSFVLPGGTLESAKLDVCRTIARRAERKVATVLREFGIGKEALVYLNRLSDLLFLLARVIEI 162
                                    34        44        54        64        74        84        94       104       114       124       134       144       154
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1WY1)

(-) CATH Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: Cob_adeno_trans] (11)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1WY1)

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 Related Entries

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UniProtKB/TrEMBL
        O58404_PYRHO | O58404: 4nwp 4nwq

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