4NWM - JenaLib

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Title :   CRYSTAL STRUCTURE OF BRUTON AGAMMAGLOBULINEMIA TYROSINE KINASE COMPLEXED WITH BMS-809959 AKA 4-TERT-BUTYL-N-[2-ME THYL-3-(6-{[4-(MORPHOLINE-4-CARBONYL)PHENYL]AMINO}-9H- PURIN-2-YL)PHENYL]BENZAMIDE

Authors :   J. K. Muckelbauer

Date :   06 Dec 13 (Deposition) - 02 Apr 14 (Release) - 08 Oct 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.03

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Kinase, Btk, Atk, Xla, Psctk1, Agmx1, At, Imd1, Mgc126261, Mgc126262 Bpk, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Q. Shi, A. Tebben, A. J. Dyckman, H. Li, C. Liu, J. Lin, S. Spergel, J. R. Burke, K. W. Mcintyre, G. C. Olini, J. Strnad, N. Surti, J. K. Muckelbauer, C. Chang, Y. An, L. Cheng, Q. Ruan, K. Leftheris, P. H. Carter, J. Tino, G. V. De Lucca
Purine Derivatives As Potent Bruton'S Tyrosine Kinase (Btk) Inhibitors For Autoimmune Diseases.
Bioorg. Med. Chem. Lett. V. 24 2206 2014
PubMed-ID: 24685542 | Reference-DOI: 10.1016/J.BMCL.2014.02.075

Molecule 1 - TYROSINE-PROTEIN KINASE BTK
	Chains	:	A, B
	EC Number	:	2.7.10.2
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Common	:	FALL ARMYWORM
	Expression System Strain	:	SF9
	Expression System Taxid	:	7108
	Expression System Vector	:	BACULOVIRUS
	Fragment	:	UNP RESIDUES 396-657
	Gene	:	BTK, AGMX1, ATK, BPK
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	AGAMMAGLOBULINEMIA TYROSINE KINASE, ATK, B-CELL PROGENITOR KINASE, BPK, BRUTON TYROSINE KINASE

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 4)

No.	Name	Count	Type	Full Name
1	2P5	2	Ligand/Ion	4-TERT-BUTYL-N-[2-METHYL-3-(6-{[4-(MORPHOLIN-4-YLCARBONYL)PHENYL]AMINO}-7H-PURIN-2-YL)PHENYL]BENZAMIDE
2	OCS	2	Mod. Amino Acid	CYSTEINESULFONIC ACID

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	2P5	1	Ligand/Ion	4-TERT-BUTYL-N-[2-METHYL-3-(6-{[4-(MORPHOLIN-4-YLCARBONYL)PHENYL]AMINO}-7H-PURIN-2-YL)PHENYL]BENZAMIDE
2	OCS	1	Mod. Amino Acid	CYSTEINESULFONIC ACID

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	2P5	1	Ligand/Ion	4-TERT-BUTYL-N-[2-METHYL-3-(6-{[4-(MORPHOLIN-4-YLCARBONYL)PHENYL]AMINO}-7H-PURIN-2-YL)PHENYL]BENZAMIDE
2	OCS	1	Mod. Amino Acid	CYSTEINESULFONIC ACID

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	THR A:410 , PHE A:413 , VAL A:416 , ALA A:428 , LYS A:430 , GLU A:475 , MET A:477 , ALA A:478 , GLY A:480 , ASN A:526 , LEU A:528 , ASP A:539 , SER A:543 , TYR A:551 , HOH A:804 , HOH A:824 , HOH A:846 , HOH A:865 , HOH A:886	BINDING SITE FOR RESIDUE 2P5 A 701
2	AC2	SOFTWARE	THR B:410 , PHE B:413 , VAL B:416 , ALA B:428 , LYS B:430 , GLU B:475 , MET B:477 , ALA B:478 , ASN B:479 , GLY B:480 , ASN B:526 , LEU B:528 , ASP B:539 , SER B:543 , TYR B:551 , HOH B:814 , HOH B:821 , HOH B:847 , HOH B:885	BINDING SITE FOR RESIDUE 2P5 B 701

(no "SS Bond" information available for 4NWM)

Asymmetric Unit

No.	Residues
1	Arg A:468	-	Pro A:469
2	Arg B:468	-	Pro B:469

(no "SAP(SNP)/Variant" information available for 4NWM)

(no "PROSITE Motif" information available for 4NWM)

(no "Exon" information available for 4NWM)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:262
                                                                                                                                                                                                                                                                                                      
               SCOP domains d4nwma_ A: automated matches                                                                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh.eeeeeeeeee..eeeeeeee...eeeeeee......hhhhhhhhhhhhhh........eeeee......eeeee.....hhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee...hhhhhh.hhhhhh......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh.........hhhhhhhhhhh...hhhhh.hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nwm A 395 MEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGcLLNYLRERHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMDE 657
                                   404       414       424       434       444       454       464       474      |484   ||  495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655  
                                                                                                                481-OCS488|                                                                                                                                                                       
                                                                                                                        490

Chain B from PDB  Type:PROTEIN  Length:262
                                                                                                                                                                                                                                                                                                      
               SCOP domains d4nwmb_ B: automated matches                                                                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh.eeeeeeeeee..eeeeeeee...eeeeeee......hhhhhhhhhhhhhh........eeeee......eeeee.....hhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee...hhhhhh.hhhhhh......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh.........hhhhhhhhhhh...hhhhh.hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nwm B 395 MEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGcLLNYLRERHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMDE 657
                                   404       414       424       434       444       454       464       474      |484   ||  495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655  
                                                                                                                481-OCS488|                                                                                                                                                                       
                                                                                                                        490

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Superfamilies( (-)

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Protein Domains( (-)

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Class: Alpha and beta proteins (a+b) (23004)

Fold: Protein kinase-like (PK-like) (2589)

Superfamily: Protein kinase-like (PK-like) (2589)

Family: Protein kinases, catalytic subunit (1977)

Protein domain: automated matches (542)

Human (Homo sapiens) [TaxId: 9606] (452)

1a	d4nwma_	A:
1b	d4nwmb_	B:

(no "CATH Domain" information available for 4NWM)

(no "Pfam Domain" information available for 4NWM)

Asymmetric Unit(hide GO term definitions)

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	Cis Peptide Bonds
		Arg A:468 - Pro A:469	[ RasMol ]
		Arg B:468 - Pro B:469	[ RasMol ]

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		Biological Unit 2	[ Jena3D ]

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	4nwm
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		Orientation in Membranes	:	OPM
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(no "Related Entries Specified in the PDB File" available for 4NWM)

Description

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Ligands, Modified Residues, Ions (2, 4)

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