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(-) Description

Title :  CRYSTAL STRUCTURE OF THE BROMODOMAIN OF HUMAN CREBBP IN COMPLEX WITH AN ISOXAZOLYL-BENZIMIDAZOLE LIGAND
 
Authors :  P. Filippakopoulos, S. Picaud, I. Felletar, D. Hay, O. Fedorov, S. Mart A. W. Pike, F. Von Delft, P. Brennan, C. H. Arrowsmith, A. M. Edwards, C S. Knapp, Structural Genomics Consortium (Sgc)
Date :  26 Nov 13  (Deposition) - 18 Dec 13  (Release) - 18 Dec 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.66
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics Consortium, Sgc, Chemical Tool, Small Molecule Inhibitor, Transcription, Transcription-Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  P. Filippakopoulos, S. Picaud, I. Felletar, D. Hay, O. Fedorov, S. Martin, A. W. Pike, F. Von Delft, P. Brennan, C. H. Arrowsmith, A. M. Edwards, C. Bountra, S. Knapp
Crystal Structure Of The Bromodomain Of Human Crebbp In Complex With An Isoxazolyl-Benzimidazole Ligand
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CREB-BINDING PROTEIN
    ChainsA
    EC Number2.3.1.48
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPNIC28-BSA4
    Expression System StrainBL21(DE3)-R3
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 1081-1197
    GeneCBP, CREBBP
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
12LL1Ligand/Ion5-(3,5-DIMETHYL-1,2-OXAZOL-4-YL)-1-[2-(MORPHOLIN-4-YL)ETHYL]-2-(2-PHENYLETHYL)-1H-BENZIMIDAZOLE
2EDO1Ligand/Ion1,2-ETHANEDIOL
3NO31Ligand/IonNITRATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:1110 , VAL A:1115 , LEU A:1119 , LEU A:1120 , TRP A:1158 , TRP A:1165 , ASN A:1168 , LYS A:1170 , VAL A:1174 , TYR A:1175 , NO3 A:1202 , EDO A:1203 , HOH A:1309BINDING SITE FOR RESIDUE 2LL A 1201
2AC2SOFTWARELEU A:1109 , PRO A:1110 , ARG A:1173 , 2LL A:1201 , HOH A:1353BINDING SITE FOR RESIDUE NO3 A 1202
3AC3SOFTWARETYR A:1175 , 2LL A:1201 , HOH A:1347BINDING SITE FOR RESIDUE EDO A 1203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NR5)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Asp A:1105 -Pro A:1106

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NR5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NR5)

(-) Exons   (0, 0)

(no "Exon" information available for 4NR5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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Chain A from PDB  Type:PROTEIN  Length:113
                                                                                                                                                  
               SCOP domains d4nr5a_ A: automated matches                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhh....hhhhh...hhhhhh..hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                4nr5 A 1083 KIFKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQS 1195
                                  1092      1102      1112      1122      1132      1142      1152      1162      1172      1182      1192   

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NR5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NR5)

(-) Gene Ontology  (66, 66)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CBP_HUMAN | Q927931jsp 1liq 1rdt 1wo3 1wo4 1wo5 1wo6 1wo7 1zoq 2d82 2kje 2kwf 2l84 2l85 2lxs 2lxt 2n1a 2rny 3dwy 3p1c 3p1d 3p1e 3p1f 3svh 4a9k 4n3w 4n4f 4nr4 4nr6 4nr7 4nyv 4nyw 4nyx 4ouf 4tqn 4ts8 4whu 4yk0 5cgp 5dbm 5eic 5eng 5ep7 5gh9 5h85 5i83 5i86 5i89 5i8b 5i8g 5j0d 5jem 5ktu 5ktw 5ktx 5mpz 5mqe 5mqg 5mqk 5tb6

(-) Related Entries Specified in the PDB File

4nr4 4nr6 4nr7