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Title :   PYRANOSE 2-OXIDASE V546C MUTANT WITH 2-FLUORINATED GALACTOSE

Authors :   T. C. Tan, O. Spadiut, R. Gandini, D. Haltrich, C. Divne

Date :   12 Sep 13 (Deposition) - 05 Feb 14 (Release) - 05 Feb 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.60

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (2x)

Keywords :   Gmc Oxidoreductase, Phbh Fold, Homotetramer, Fad-Binding, Substrate Complex, Flavinylation, Intracellular, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. C. Tan, O. Spadiut, R. Gandini, D. Haltrich, C. Divne
Structural Basis For Binding Of Fluorinated Glucose And Galactose To Trametes Multicolor Pyranose 2-Oxidase Variant With Improved Galactose Conversion.
Plos One V. 9 86736 2014
PubMed-ID: 24466218 | Reference-DOI: 10.1371/JOURNAL.PONE.0086736

Molecule 1 - PYRANOSE 2-OXIDASE
	Chains	:	A, B
	EC Number	:	1.1.3.10
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET21(D+)
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	P2O
	Mutation	:	YES
	Organism Common	:	WHITE-ROT FUNGUS
	Organism Scientific	:	TRAMETES OCHRACEA
	Organism Taxid	:	230624
	Synonym	:	PYRANOSE OXIDASE

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (2x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 6)

No.	Name	Count	Type	Full Name
1	2FG	3	Ligand/Ion	2-FLUORO-2-DEOXY-BETA-D-GALACTOPYRANOSE
2	FDA	2	Ligand/Ion	DIHYDROFLAVINE-ADENINE DINUCLEOTIDE
3	MES	1	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID

Biological Unit 1 (3, 12)

No.	Name	Count	Type	Full Name
1	2FG	6	Ligand/Ion	2-FLUORO-2-DEOXY-BETA-D-GALACTOPYRANOSE
2	FDA	4	Ligand/Ion	DIHYDROFLAVINE-ADENINE DINUCLEOTIDE
3	MES	2	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	VAL A:52 , GLY A:53 , GLY A:55 , PRO A:56 , ILE A:57 , ASP A:76 , ILE A:77 , THR A:158 , ARG A:159 , VAL A:160 , GLY A:163 , MET A:164 , SER A:165 , HIS A:167 , TRP A:168 , THR A:169 , CYS A:170 , ALA A:171 , VAL A:281 , CYS A:283 , THR A:319 , ALA A:320 , HIS A:324 , PHE A:454 , LEU A:547 , ASN A:593 , THR A:595 , 2FG A:802 , HOH A:902 , HOH A:942 , HOH A:950 , HOH A:962 , HOH A:984 , HOH A:1015 , HOH A:1021 , HOH A:1027 , HOH A:1040	BINDING SITE FOR RESIDUE FDA A 801
2	AC2	SOFTWARE	THR A:169 , GLN A:448 , HIS A:450 , ASP A:452 , PHE A:454 , TYR A:456 , ARG A:472 , LEU A:545 , CYS A:546 , HIS A:548 , ASN A:593 , FDA A:801	BINDING SITE FOR RESIDUE 2FG A 802
3	AC3	SOFTWARE	GLY A:398 , ALA A:399 , ASN A:402 , LYS A:403 , HIS A:404 , PRO A:405 , HOH A:1007 , HOH A:1490 , SER B:293 , ARG B:571 , GLY B:574 , LYS B:576 , HOH B:1177 , HOH B:1435	BINDING SITE FOR RESIDUE 2FG A 803
4	AC4	SOFTWARE	VAL B:52 , GLY B:53 , GLY B:55 , PRO B:56 , ILE B:57 , ASP B:76 , ILE B:77 , THR B:158 , ARG B:159 , VAL B:160 , GLY B:163 , MET B:164 , HIS B:167 , TRP B:168 , THR B:169 , CYS B:170 , ALA B:171 , VAL B:281 , CYS B:283 , THR B:319 , ALA B:320 , HIS B:324 , LEU B:547 , ASN B:593 , THR B:595 , 2FG B:802 , HOH B:930 , HOH B:933 , HOH B:934 , HOH B:964 , HOH B:966 , HOH B:975 , HOH B:989 , HOH B:1009	BINDING SITE FOR RESIDUE FDA B 801
5	AC5	SOFTWARE	THR B:169 , GLN B:448 , HIS B:450 , ASP B:452 , PHE B:454 , TYR B:456 , ARG B:472 , LEU B:545 , CYS B:546 , HIS B:548 , ASN B:593 , FDA B:801	BINDING SITE FOR RESIDUE 2FG B 802
6	AC6	SOFTWARE	LYS A:576 , HOH A:1032 , HOH A:1051 , GLY B:398 , ALA B:399 , ASN B:402 , LYS B:403 , HIS B:404 , PRO B:405 , ASP B:406 , HOH B:1275	BINDING SITE FOR RESIDUE MES B 803

(no "SS Bond" information available for 4MOQ)

Asymmetric Unit

No.	Residues
1	Arg A:265	-	Pro A:266
2	Arg B:265	-	Pro B:266

(no "SAP(SNP)/Variant" information available for 4MOQ)

(no "PROSITE Motif" information available for 4MOQ)

(no "Exon" information available for 4MOQ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:569
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhhhhhhhhhhh..eeeee.................hhhhhhhhhhhhhhhhhh.ee.................................hhhhh....ee....hhhhhh........hhhhh......hhhhhhhhhhhhhhhhhhhhhee......hhhhhhhhhhhhhhh......ee..eeeeeee..eeee.hhhhhh....eee..eeeeeeeee..eeeeeeee......eeeeeeee.....eeee.eeeeee.hhhhhhhhhhhhh............................eeeeeeeehhhhhhhhh...eee........eee..........hhhhhhhhhhhhhhh..............eee........eeeeee.........hhh.eeeeeeee........eeeeeeeee.....eeeeee.....hhhhhhhhhhhhhhhhhhh..eee......ee.....................................eee.hhhhh.......hhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4moq A  46 KYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMSTHWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLTEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPANPPELLPSLGSYITEQSLVFCQTVMSTELIDSVKSDMTIRGTPGELTYSVTYTPGASTNKHPDWWNEKVKNHMMQHQEDPLPIPFEDPEPQVTTLFQPSHPWHTQIHRDAFSYQSIDSRLIVDWRFFGRTEPKEENKLWFSDKITDAYNMPQPTFDFRFPAGRTSKEAEDMMTDMCVMSAKIGGFLPGSLPQFMEPGLCLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEYIKQNFTPSPF 618
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455||     469       479       489       499       509       519       529       539       549       559       569       579       589       599       609         
                                                                                                                                                                                                                                                                                                                                                                                                                                                    456|                                                                                                                                                             
                                                                                                                                                                                                                                                                                                                                                                                                                                                     461

Chain B from PDB  Type:PROTEIN  Length:572
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee..hhhhhhhhhhhhhhh.eeeee.................hhhhhhh..hhhhhhhh..ee..........................................ee....hhhhhh........hhhhh......hhhhhhhhhhhhhhhhhhhhhee......hhhhhhhhhhhhhhh......ee..eeeeeee..eeee.hhhhhh....eee..eeeeeeeee..eeeeeeee......eeeeeeee.....eeeeeeeeeee..hhhhhhhhhhhh............................eeeeeeeehhhhhhhhh...eee........eee..........hhhhhhhhhhhhhhh..............eee........eeeeee.........hhh.eeeeeeee........eeeeeeeee.....eeeeee.....hhhhhhhhhhhhhhhhhhh..eee......ee.....................................eee.hhhhh.......hhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4moq B  43 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMSTHWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLTEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPANPPELLPSLGSYITEQSLVFCQTVMSTELIDSVKSDMTIRGTPGELTYSVTYTPGASTNKHPDWWNEKVKNHMMQHQEDPLPIPFEDPEPQVTTLFQPSHPWHTQIHRDAFSYQSIDSRLIVDWRFFGRTEPKEENKLWFSDKITDAYNMPQPTFDFRFPAGRTSKEAEDMMTDMCVMSAKIGGFLPGSLPQFMEPGLCLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEYIKQNFTPSPF 618
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452   ||  466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616  
                                                                                                                                                                                                                                                                                                                                                                                                                                                       456|                                                                                                                                                             
                                                                                                                                                                                                                                                                                                                                                                                                                                                        461

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4MOQ)

(no "CATH Domain" information available for 4MOQ)

(no "Pfam Domain" information available for 4MOQ)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Cis Peptide Bonds
		Arg A:265 - Pro A:266	[ RasMol ]
		Arg B:265 - Pro B:266	[ RasMol ]

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 6)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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Gene Ontology (6, 6)

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