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(-) Description

Title :  PYRANOSE 2-OXIDASE V546C MUTANT WITH 2-FLUORINATED GLUCOSE
 
Authors :  T. C. Tan, O. Spadiut, R. Gandini, D. Haltrich, C. Divne
Date :  12 Sep 13  (Deposition) - 05 Feb 14  (Release) - 05 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Phbh Fold, Homotetramer, Fad-Binding, Substrate Complex, Flavinylation, Intracellular, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. C. Tan, O. Spadiut, R. Gandini, D. Haltrich, C. Divne
Structural Basis For Binding Of Fluorinated Glucose And Galactose To Trametes Multicolor Pyranose 2-Oxidase Variant With Improved Galactose Conversion.
Plos One V. 9 86736 2014
PubMed-ID: 24466218  |  Reference-DOI: 10.1371/JOURNAL.PONE.0086736

(-) Compounds

Molecule 1 - PYRANOSE 2-OXIDASE
    Chains: A
    EC Number: 1.1.3.10
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21(D+)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: PYRANOSE 2-OXIDASE
    Gene: P2O
    Mutation: YES
    Organism Common: WHITE-ROT FUNGUS
    Organism Scientific: TRAMETES OCHRACEA
    Organism Taxid: 230624
    Synonym: PYRANOSE OXIDASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric Unit (3, 3)
No.NameCountTypeFull Name
1FDA1Ligand/IonDIHYDROFLAVINE-ADENINE DINUCLEOTIDE
2MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3SHG1Ligand/Ion2-DEOXY-2-FLUORO-BETA-D-GLUCOPYRANOSE
Biological Unit 1 (3, 12)
No.NameCountTypeFull Name
1FDA4Ligand/IonDIHYDROFLAVINE-ADENINE DINUCLEOTIDE
2MES4Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3SHG4Ligand/Ion2-DEOXY-2-FLUORO-BETA-D-GLUCOPYRANOSE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:52 , GLY A:53 , GLY A:55 , PRO A:56 , ILE A:57 , ASP A:76 , ILE A:77 , GLY A:78 , THR A:158 , ARG A:159 , VAL A:160 , GLY A:163 , MET A:164 , HIS A:167 , TRP A:168 , THR A:169 , CYS A:170 , ALA A:171 , VAL A:281 , CYS A:283 , THR A:319 , ALA A:320 , HIS A:324 , LEU A:547 , ASN A:593 , THR A:595 , SHG A:802 , HOH A:901 , HOH A:910 , HOH A:914 , HOH A:934 , HOH A:943 , HOH A:989 , HOH A:996 , HOH A:1017 , HOH A:1018BINDING SITE FOR RESIDUE FDA A 801
2AC2SOFTWARETHR A:169 , GLN A:448 , HIS A:450 , ARG A:472 , CYS A:546 , HIS A:548 , ASN A:593 , FDA A:801BINDING SITE FOR RESIDUE SHG A 802
3AC3SOFTWARELEU A:121 , VAL A:123 , TRP A:131 , GLN A:132 , ALA A:133 , PHE A:137 , ARG A:139 , LEU A:149 , SER A:462 , ILE A:463 , ASP A:464BINDING SITE FOR RESIDUE MES A 803

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MOH)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Arg A:265 -Pro A:266

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MOH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MOH)

(-) Exons   (0, 0)

(no "Exon" information available for 4MOH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:576
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeee..hhhhhhhhhhhhhh..eeeee.................hhhhhhh..hhhhhhhh..ee..........................................ee....hhhhhh........hhhhh......hhhhhhhhhhhhhhhhhhhhhee......hhhhhhhhhhhhhhh......ee..eeeeeee..eeee.hhhhhh.............eeeee..eeeeeeee......eeeeeeee.....eeeeeeeeeee..hhhhhhhhhhhh............................eeeeeeeehhhhhhhhh...eee........eee..........hhhhhhhhhhhhhhh..............eee........eeeeee........hhhhhhhh.eeeeeeee........eeeeeeeee.....eeeeee.....hhhhhhhhhhhhhhhhhhh..eee......ee.....................................eee.hhhhh.......hhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4moh A  43 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMSTHWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLTEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPANPPELLPSLGSYITEQSLVFCQTVMSTELIDSVKSDMTIRGTPGELTYSVTYTPGASTNKHPDWWNEKVKNHMMQHQEDPLPIPFEDPEPQVTTLFQPSHPWHTQIHRDAFSYGAVQQSIDSRLIVDWRFFGRTEPKEENKLWFSDKITDAYNMPQPTFDFRFPAGRTSKEAEDMMTDMCVMSAKIGGFLPGSLPQFMEPGLCLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEYIKQNFTPSPF 618
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MOH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MOH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MOH)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)

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  1.1.3.10
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q7ZA32_TRAOC | Q7ZA32: 1tt0 2igk 2igm 2ign 2igo 3bg6 3bg7 3bly 3fdy 3k4b 3k4c 3k4j 3k4k 3k4l 3k4m 3k4n 3lsh 3lsi 3lsk 3lsm 3pl8 4moe 4mof 4mog 4moi 4moj 4mok 4mol 4mom 4moo 4mop 4moq 4mor 4mos

(-) Related Entries Specified in the PDB File

1tt0 2igo 3pl8 4moe 4mof 4mog 4moi 4moj 4mok 4mol 4mom 4moo 4mop 4moq 4mor 4mos