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(-) Description

Title :  CRYSTAL STRUCTURE OF THE EZH2 SET DOMAIN
 
Authors :  S. Antonysamy, B. Condon, Z. Druzina, J. Bonanno, T. Gheyi, I. Macewan, S. Ashok, M. Russell, J. G. Luz
Date :  30 Aug 13  (Deposition) - 08 Jan 14  (Release) - 08 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Antonysamy, B. Condon, Z. Druzina, J. B. Bonanno, T. Gheyi, F. Zhang I. Macewan, A. Zhang, S. Ashok, L. Rodgers, M. Russell, J. Gately Luz
Structural Context Of Disease-Associated Mutations And Putative Mechanism Of Autoinhibition Revealed By X-Ray Crystallographic Analysis Of The Ezh2-Set Domain.
Plos One V. 8 84147 2013
PubMed-ID: 24367637  |  Reference-DOI: 10.1371/JOURNAL.PONE.0084147

(-) Compounds

Molecule 1 - HISTONE-LYSINE N-METHYLTRANSFERASE EZH2
    Chains: A
    EC Number: 2.1.1.43
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Fragment: SET DOMAIN (UNP RESIDUES 521-746)
    Gene: EZH2, KMT6
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ENX-1, ENHANCER OF ZESTE HOMOLOG 2, LYSINE N- METHYLTRANSFERASE 6

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric/Biological Unit (2, 7)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
2ZN6Ligand/IonZINC ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:568 , ASN A:687 , LYS A:688 , HOH A:930 , HOH A:1032BINDING SITE FOR RESIDUE SO4 A 801
2AC2SOFTWARECYS A:565 , CYS A:578 , CYS A:585 , CYS A:590BINDING SITE FOR RESIDUE ZN A 802
3AC3SOFTWARECYS A:565 , CYS A:567 , CYS A:571 , CYS A:576BINDING SITE FOR RESIDUE ZN A 803
4AC4SOFTWARECYS A:571 , CYS A:585 , CYS A:593 , CYS A:606BINDING SITE FOR RESIDUE ZN A 804
5AC5SOFTWARECYS A:528 , CYS A:541 , CYS A:548 , CYS A:552 , ZN A:806BINDING SITE FOR RESIDUE ZN A 805
6AC6SOFTWARECYS A:528 , HIS A:530 , CYS A:535 , CYS A:539 , ZN A:805BINDING SITE FOR RESIDUE ZN A 806
7AC7SOFTWARECYS A:535 , CYS A:548 , CYS A:554 , CYS A:558BINDING SITE FOR RESIDUE ZN A 807

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MI5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4MI5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MI5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MI5)

(-) Exons   (0, 0)

(no "Exon" information available for 4MI5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:208
                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................hhhhhh...............................hhhhhh.....................hhhhhh....eeeee.....eeeee........eeee...eeeehhhhhhhhhh........eee....eeee.....hhhhhhee.....eeeeeeee..eeeeeeee..........ee....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mi5 A 523 GSLQPCDHPRQPCDSSCPCVIAQNFCEKFCQCSSECQNRFPGCRCKAQCNTKQCPCYLAVRECDPDLCLTCGAADVSCKNCSIQRGSKKHLLLAPSDVAGWGIFIKDPVQKNEFISEYCGEIISQDEADRRGKVYDKYMCSFLFNLNNDFVVDATRKGNKIRFANHSVNPNCYAKVMMVNGDHRIGIFAKRAIQTGEELFFDYRYSQA 736
                                   532       542       552       562       572       582       592    || 608       618       628       638       648       658       668       678       688       698       708       718       728        
                                                                                                    597|                                                                                                                                    
                                                                                                     604
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MI5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MI5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MI5)

(-) Gene Ontology  (59, 59)

Asymmetric/Biological Unit(hide GO term definitions)

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  4mi5
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  EZH2_HUMAN | Q15910
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  2.1.1.43
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        EZH2_HUMAN | Q15910: 2c6v 4mi0 5gsa 5h14 5h15 5h17 5h19 5h24 5h25 5hyn 5ij7 5ij8 5ls6 5u5t 5u62 5wuk

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4MI5)