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(-) Description

Title :  EED IN COMPLEX WITH PRC2 ALLOSTERIC INHIBITOR COMPOUND 8
 
Authors :  K. Zhao, M. Zhao, X. Luo, H. Zhang
Date :  14 Oct 16  (Deposition) - 25 Jan 17  (Release) - 05 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Eed, Prc2, Inhibitor, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Huang, J. Zhang, Z. Yu, H. Zhang, Y. Wang, A. Lingel, W. Qi, J. Gu, K. Zhao, M. D. Shultz, L. Wang, X. Fu, Y. Sun, Q. Zhang, X. Jiang, J. Zhang C. Zhang, L. Li, J. Zeng, L. Feng, C. Zhang, Y. Liu, M. Zhang, L. Zhang, M. Zhao, Z. Gao, X. Liu, D. Fang, H. Guo, Y. Mi, T. Gabriel, M. P. Dillon, P. Atadja, C. Oyang
Discovery Of First-In-Class, Potent, And Orally Bioavailabl Embryonic Ectoderm Development (Eed) Inhibitor With Robust Anticancer Efficacy
J. Med. Chem. V. 60 2215 2017
PubMed-ID: 28092155  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.6B01576

(-) Compounds

Molecule 1 - POLYCOMB PROTEIN EED
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-KG
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 76-441
    Gene: EED
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HEED,WD PROTEIN ASSOCIATING WITH INTEGRIN CYTOPLASMIC TAILS 1,WAIT-1
 
Molecule 2 - HISTONE-LYSINE N-METHYLTRANSFERASE EZH2
    Chains: C, D
    EC Number: 2.1.1.43
    Engineered: YES
    Fragment: UNP RESIDUES 40-68
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ENX-1,ENHANCER OF ZESTE HOMOLOG 2,LYSINE N-METHYLTRANSFERASE 6
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1LQG2Ligand/Ion5-(FURAN-2-YLMETHYLAMINO)-[1,2,4]TRIAZOLO[4,3-A]PYRIDINE-6-CARBONITRILE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1LQG1Ligand/Ion5-(FURAN-2-YLMETHYLAMINO)-[1,2,4]TRIAZOLO[4,3-A]PYRIDINE-6-CARBONITRILE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1LQG1Ligand/Ion5-(FURAN-2-YLMETHYLAMINO)-[1,2,4]TRIAZOLO[4,3-A]PYRIDINE-6-CARBONITRILE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:97 , TYR A:148 , ASN A:194 , LYS A:211 , LEU A:240 , ASP A:310 , TYR A:365 , ARG A:367binding site for residue LQG A 501
2AC2SOFTWAREPHE B:97 , TYR B:148 , ASN B:194 , LYS B:211 , LEU B:240 , ASP B:310 , TYR B:365 , ARG B:367 , HOH B:610binding site for residue LQG B 501

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:78 -A:401
2B:78 -B:401

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5H24)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5H24)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5H24)

(-) Exons   (0, 0)

(no "Exon" information available for 5H24)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:364
                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeee........eeee.........eeeeeee..eeeeeee.....eeeeeeee.......eeeeeeee......eeeeeee....eeeee....eeeeee......eeeeee......eeeeee....eeeee....eeeeee.........eeeeee.....eeeeee....eeeee..hhhhhhhhhhhhhh...........eee....eee.........eeeee..eeeee....eeeeeee................eeeeeeee...........ee.....eeeee.....eeeee......................eeeeee.....eeeeee...eeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5h24 A  77 KCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 440
                                    86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436    


Chain B from PDB  Type:PROTEIN  Length:359
                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeee........eeee.........eeeeeee..eeeeeee.....eeeeeeee.......eeeeeeee......eeeeeee...eeeeee....eeeeeee.....eeeeee......eeeeee....eeeee....eeeeee.........eeeeee.....eeeeee....eeeee..hhhhhhhhhhhhhh......eee....eee.........eeeee..eeeee....eeeeeee................eeeeeeee..........eee.....eeeee.....eeeee.........eeeee........eeeeee.....eeeeee...eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5h24 B  77 KCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 440
                                    86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276    || 291       301       311       321       331       341       351       361       371       381       391       401       411       421       431         
                                                                                                                                                                                                                                      281|                                                                                                                                                         
                                                                                                                                                                                                                                       287                                                                                                                                                         


Chain C from PDB  Type:PROTEIN  Length:29
                                                             
               SCOP domains ----------------------------- SCOP domains
               CATH domains ----------------------------- CATH domains
               Pfam domains ----------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------- SAPs(SNPs)
                    PROSITE ----------------------------- PROSITE
                 Transcript ----------------------------- Transcript
                 5h24 C  40 SMFSSNRQKILERTEILNQEWKQRRIQPV  68
                                    49        59         


Chain D from PDB  Type:PROTEIN  Length:29
                                                             
               SCOP domains ----------------------------- SCOP domains
               CATH domains ----------------------------- CATH domains
               Pfam domains ----------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------- SAPs(SNPs)
                    PROSITE ----------------------------- PROSITE
                 Transcript ----------------------------- Transcript
                 5h24 D  40 SMFSSNRQKILERTEILNQEWKQRRIQPV  68
                                    49        59
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5H24)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5H24)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5H24)

(-) Gene Ontology  (66, 79)

Asymmetric Unit(hide GO term definitions)

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  5h24
    Family and Domain Information: ProDom | SYSTERS
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  EED_HUMAN | O75530
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  EZH2_HUMAN | Q15910
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  2.1.1.43
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        EED_HUMAN | O75530: 3iiw 3iiy 3ij0 3ij1 3ijc 3jpx 3jzg 3jzh 3jzn 3k26 3k27 4x3e 5gsa 5h13 5h14 5h15 5h17 5h19 5h25 5hyn 5ij7 5ij8 5k0m 5ls6 5ttw 5u5h 5u5k 5u5t 5u62 5u69 5u6d 5u8a 5u8f 5wuk
        EZH2_HUMAN | Q15910: 2c6v 4mi0 4mi5 5gsa 5h14 5h15 5h17 5h19 5h25 5hyn 5ij7 5ij8 5ls6 5u5t 5u62 5wuk

(-) Related Entries Specified in the PDB File

5h13 5h14 5h15 5h17 5h19 5h25