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Title :   A HIGH RESOLUTION STRUCTURE OF HUMAN GLUTAMATE CARBOXYPEPTIDASE II (GCPII) HIS475TYR VARIANT IN COMPLEX WITH GLUTAMIC ACID

Authors :   J. Ptacek, C. Barinka, P. Sacha, M. Navratil

Date :   21 Aug 13 (Deposition) - 18 Jun 14 (Release) - 13 Aug 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.83

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Zinc Metallopeptidase, Gcpii, Prostate Specific Membrane Antigen, Folate Hydrolase 1, Folh1, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Navratil, J. Ptacek, P. Sacha, J. Starkova, J. Lubkowski, C. Barinka, J. Konvalinka
Structural And Biochemical Characterization Of The Folyl-Poly-Gamma-L-Glutamate Hydrolyzing Activity Of Human Glutamate Carboxypeptidase Ii.
Febs J. V. 281 3228 2014
PubMed-ID: 24863754 | Reference-DOI: 10.1111/FEBS.12857

Molecule 1 - GLUTAMATE CARBOXYPEPTIDASE 2
	Chains	:	A
	EC Number	:	3.4.17.21
	Engineered	:	YES
	Expression System	:	DROSOPHILA MELANOGASTER
	Expression System Cell	:	SCHNEIDER'S S2
	Expression System Taxid	:	7227
	Fragment	:	GLUTAMATE CARBOXYPEPTIDASE II, UNP RESIDUES 44-750
	Gene	:	FOLH1, FOLH, NAALAD1, PSM, PSMA, GIG27
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	CELL GROWTH-INHIBITING GENE 27 PROTEIN, FOLATE HYDROLASE 1, FOLYLPOLY-GAMMA-GLUTAMATE CARBOXYPEPTIDASE, FGCP, GLUTAMATE CARBOXYPEPTIDASE II, GCPII, MEMBRANE GLUTAMATE CARBOXYPEPTIDASE, MGCP, N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE I, NAALADASE I, PROSTATE-SPECIFIC MEMBRANE ANTIGEN, PSM, PSMA, PTEROYLPOLY-GAMMA- GLUTAMATE CARBOXYPEPTIDASE

		1
Asymmetric Unit	:	A
Biological Unit 1 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (8, 19)

No.	Name	Count	Type	Full Name
1	ASP	1	Mod. Amino Acid	ASPARTIC ACID
2	BMA	1	Ligand/Ion	BETA-D-MANNOSE
3	CA	1	Ligand/Ion	CALCIUM ION
4	CL	1	Ligand/Ion	CHLORIDE ION
5	GLU	1	Mod. Amino Acid	GLUTAMIC ACID
6	MAN	1	Ligand/Ion	ALPHA-D-MANNOSE
7	NAG	11	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
8	ZN	2	Ligand/Ion	ZINC ION

Biological Unit 1 (5, 30)

No.	Name	Count	Type	Full Name
1	ASP	2	Mod. Amino Acid	ASPARTIC ACID
2	BMA	2	Ligand/Ion	BETA-D-MANNOSE
3	CA	-1	Ligand/Ion	CALCIUM ION
4	CL	-1	Ligand/Ion	CHLORIDE ION
5	GLU	2	Mod. Amino Acid	GLUTAMIC ACID
6	MAN	2	Ligand/Ion	ALPHA-D-MANNOSE
7	NAG	22	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
8	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (19, 19)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASN A:76 , GLN A:95 , GLN A:99 , NAG A:802 , HOH A:1146 , HOH A:1184 , HOH A:1302 , HOH A:1336 , HOH A:1401	BINDING SITE FOR RESIDUE NAG A 801
02	AC2	SOFTWARE	NAG A:801 , HOH A:1155 , HOH A:1401	BINDING SITE FOR RESIDUE NAG A 802
03	AC3	SOFTWARE	ASN A:121 , HIS A:124 , THR A:349 , HOH A:1216	BINDING SITE FOR RESIDUE NAG A 803
04	AC4	SOFTWARE	TYR A:127 , GLU A:137 , ILE A:138 , ASN A:140 , NAG A:805 , HOH A:1360	BINDING SITE FOR RESIDUE NAG A 804
05	AC5	SOFTWARE	NAG A:804 , HOH A:1284	BINDING SITE FOR RESIDUE NAG A 805
06	AC6	SOFTWARE	ASN A:195 , SER A:197	BINDING SITE FOR RESIDUE NAG A 806
07	AC7	SOFTWARE	TRP A:246 , ASN A:459 , PHE A:565 , TYR A:566 , HOH A:977 , HOH A:1171 , HOH A:1217 , HOH A:1275 , HOH A:1369	BINDING SITE FOR RESIDUE NAG A 807
08	AC8	SOFTWARE	SER A:472 , ASN A:476 , NAG A:809 , HOH A:1223	BINDING SITE FOR RESIDUE NAG A 808
09	AC9	SOFTWARE	GLN A:651 , NAG A:808 , HOH A:1117	BINDING SITE FOR RESIDUE NAG A 809
10	BC1	SOFTWARE	TYR A:277 , SER A:631 , SER A:634 , ASN A:638 , GLN A:740 , NAG A:811 , HOH A:1025 , HOH A:1059 , HOH A:1250	BINDING SITE FOR RESIDUE NAG A 810
11	BC2	SOFTWARE	GLU A:276 , NAG A:810 , BMA A:812	BINDING SITE FOR RESIDUE NAG A 811
12	BC3	SOFTWARE	HIS A:112 , GLU A:276 , ARG A:354 , NAG A:811 , MAN A:813	BINDING SITE FOR RESIDUE BMA A 812
13	BC4	SOFTWARE	PHE A:235 , SER A:241 , GLU A:276 , BMA A:812 , HOH A:1090 , HOH A:1248 , HOH A:1251 , HOH A:1423	BINDING SITE FOR RESIDUE MAN A 813
14	BC5	SOFTWARE	ASP A:387 , GLU A:425 , HIS A:553 , ZN A:815 , ASP A:819 , HOH A:1454	BINDING SITE FOR RESIDUE ZN A 814
15	BC6	SOFTWARE	HIS A:377 , ASP A:387 , GLU A:424 , GLU A:425 , ASP A:453 , ZN A:814 , ASP A:819 , HOH A:1454	BINDING SITE FOR RESIDUE ZN A 815
16	BC7	SOFTWARE	THR A:269 , TYR A:272 , GLU A:433 , GLU A:436 , HOH A:906	BINDING SITE FOR RESIDUE CA A 816
17	BC8	SOFTWARE	ASN A:451 , ASP A:453 , ARG A:534 , ARG A:536	BINDING SITE FOR RESIDUE CL A 817
18	BC9	SOFTWARE	ARG A:210 , ASN A:257 , GLU A:424 , GLU A:425 , GLY A:427 , LEU A:428 , GLY A:518 , TYR A:552 , HIS A:553 , LYS A:699 , TYR A:700 , ASP A:819 , HOH A:909 , HOH A:1074	BINDING SITE FOR RESIDUE GLU A 818
19	CC1	SOFTWARE	ASP A:387 , ASP A:453 , GLY A:518 , ASN A:519 , ARG A:534 , ARG A:536 , TYR A:552 , HIS A:553 , ZN A:814 , ZN A:815 , GLU A:818 , HOH A:1070 , HOH A:1416 , HOH A:1435 , HOH A:1437 , HOH A:1454	BINDING SITE FOR RESIDUE ASP A 819

(no "SS Bond" information available for 4MCS)

Asymmetric Unit

No.	Residues
1	Tyr A:242	-	Pro A:243
2	Gly A:330	-	Pro A:331
3	Asp A:387	-	Pro A:388

(no "SAP(SNP)/Variant" information available for 4MCS)

(no "PROSITE Motif" information available for 4MCS)

(no "Exon" information available for 4MCS)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:693
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh...eeeeeeeeeeeee.......eeeee.....eeee.....................ee.......ee.eee....hhhhhhhhhhh........eeeee....hhhhhhhhhhhh...eeeee.hhhhhh....................ee........................hhhhh.......eeeehhhhhhhhhh........hhhhh.............hhhhh..eeeee...eeeeeeeeeeeeee....eeeeeeeeeee..........hhhhhhhhhhhhhhhhhhhhh.....eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhheeeeee.........eeeeee...hhhhhhhhhhhh..........hhhhhhhhhh...................hhhhhh....eeeeeeee................hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh.hhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh................eeee..eeeeeeehhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mcs A  55 KHNMKAFLDELKAENIKKFLYNFTQIPHLAGTEQNFQLAKQIQSQWKEFGLDSVELAHYDVLLSYPNKTHPNYISIINEDGNEIFNTSLFEPPPPGYENVSDIVPPFSAFSPQGMPEGDLVYVNYARTEDFFKLERDMKINCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSDPADYFAPGVKSYPDGWNLPGGGVQRGNILNLNGAGDPLTPGYPANEYAYRRGIAEAVGLPSIPVHPIGYYDAQKLLEKMGGSAPPDSSWRGSLKVPYNVGPGFTGNFSTQKVKMHIHSTNEVTRIYNVIGTLRGAVEPDRYVILGGHRDSWVFGGIDPQSGAAVVHEIVRSFGTLKKEGWRPRRTILFASWDAEEFGLLGSTEWAEENSRLLQERGVAYINADSSIEGNYTLRVDCTPLMYSLVYNLTKELKSPDEGFEGKSLYESWTKKSPSPEFSGMPRISKLGSGNDFEVFFQRLGIASGRARYTKNNKFSGYPLYHSVYETYELVEKFYDPMFKYHLTVAQVRGGMVFELANSIVLPFDCRDYAVVLRKYADKIYSISMKHPQEMKTYSVSFDSLFSAVKNFTEIASKFSERLQDFSNPIVLRMMNDQLMFLERAFIDPLGLPDRPFYRHVIYAPSSHNKYAGESFPGIYDALFDIESKVDPSKAWGEVKRQIYVAAFTVQAAAETLSEVAED 819
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534     ||547       557       567       577       587       597       607       617       627       637       647     ||659       669       679       689       699       709       719       729       739       749|| 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               540|                                                                                                          653|                                                                                           750| 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                544                                                                                                           656                                                                                            818

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4MCS)

(no "CATH Domain" information available for 4MCS)

(no "Pfam Domain" information available for 4MCS)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
		Asp A:387 - Pro A:388	[ RasMol ]
		Gly A:330 - Pro A:331	[ RasMol ]
		Tyr A:242 - Pro A:243	[ RasMol ]

Biological Unit
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (8, 19)

Sites (19, 19)

SS Bonds (0, 0)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

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Gene Ontology (22, 22)

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