2XEI - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Title :   HUMAN GLUTAMATE CARBOXYPEPTIDASE II IN COMPLEX WITH ANTIBODY-RECRUITING MOLECULE ARM-P2

Authors :   A. X. Zhang, R. P. Murelli, C. Barinka, J. Michel, A. Cocleaza, W. L. Jorg J. Lubkowski, D. A. Spiegel

Date :   14 May 10 (Deposition) - 08 Sep 10 (Release) - 16 Sep 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.69

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Metallopeptidase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. X. Zhang, R. P. Murelli, C. Barinka, J. Michel, A. Cocleaza, W. L. Jorgensen, J. Lubkowski, D. A. Spiegel
A Remote Arene-Binding Site On Prostate Specific Membrane Antigen Revealed By Antibody-Recruiting Small Molecules.
J. Am. Chem. Soc. V. 132 12711 2010
PubMed-ID: 20726553 | Reference-DOI: 10.1021/JA104591M

Molecule 1 - GLUTAMATE CARBOXYPEPTIDASE 2
	Chains	:	A
	EC Number	:	3.4.17.21
	Engineered	:	YES
	Expression System	:	DROSOPHILA MELANOGASTER
	Expression System Cell Line	:	S2
	Expression System Common	:	FRUIT FLY
	Expression System Taxid	:	7227
	Fragment	:	ECTODOMAIN, RESIDUES 44-750
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	GLUTAMATE CARBOXYPEPTIDASE II, MEMBRANE GLUTAMATE CARBOXYPEPTIDASE, GCPII, N-ACETYLATED -ALPHA-LINKED ACIDIC DIPEPTIDASE I, NAALADASE I, PTEROYLPOLY-GAMMA-GLUTAMATE CARBOXYPEPTIDASE, FOLYLPOLY-GAMMA-GLUTAMATE CARBOXYPEPTIDASE, MGCP, FGCP, FOLATE HYDROLASE 1, PROSTATE-SPECIFIC MEMBRANE ANTIGEN, PSMA, PSM, CELL GROWTH-INHIBITING GENE 27 PROTEIN

		1
Asymmetric Unit	:	A
Biological Unit 1 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (7, 18)

No.	Name	Count	Type	Full Name
1	ARK	1	Ligand/Ion	N-({(1S)-5-[4-({2-[2-({2,4-BIS[HYDROXY(OXO)AMMONIO]PHENYL}AMINO)ETHOXY]ETHOXY}METHYL)-1H-1,2,3-TRIAZOL-1-YL]-1-CARBOXYPENTYL}CARBAMOYL)-L-GLUTAMIC ACID
2	BMA	1	Ligand/Ion	BETA-D-MANNOSE
3	CA	1	Ligand/Ion	CALCIUM ION
4	CL	1	Ligand/Ion	CHLORIDE ION
5	MAN	1	Ligand/Ion	ALPHA-D-MANNOSE
6	NAG	11	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
7	ZN	2	Ligand/Ion	ZINC ION

Biological Unit 1 (4, 28)

No.	Name	Count	Type	Full Name
1	ARK	2	Ligand/Ion	N-({(1S)-5-[4-({2-[2-({2,4-BIS[HYDROXY(OXO)AMMONIO]PHENYL}AMINO)ETHOXY]ETHOXY}METHYL)-1H-1,2,3-TRIAZOL-1-YL]-1-CARBOXYPENTYL}CARBAMOYL)-L-GLUTAMIC ACID
2	BMA	2	Ligand/Ion	BETA-D-MANNOSE
3	CA	-1	Ligand/Ion	CALCIUM ION
4	CL	-1	Ligand/Ion	CHLORIDE ION
5	MAN	2	Ligand/Ion	ALPHA-D-MANNOSE
6	NAG	22	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
7	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:387 , GLU A:425 , HIS A:553 , ZN A:1752 , ARK A:1770	BINDING SITE FOR RESIDUE ZN A1751
02	AC2	SOFTWARE	HIS A:377 , ASP A:387 , GLU A:424 , GLU A:425 , ASP A:453 , ZN A:1751	BINDING SITE FOR RESIDUE ZN A1752
03	AC3	SOFTWARE	THR A:269 , TYR A:272 , GLU A:433 , GLU A:436 , HOH A:2154	BINDING SITE FOR RESIDUE CA A1753
04	AC4	SOFTWARE	ASN A:451 , ASP A:453 , ARG A:534 , ARG A:536	BINDING SITE FOR RESIDUE CL A1754
05	AC5	SOFTWARE	ASN A:121 , THR A:123 , HIS A:124 , THR A:349 , HOH A:2222	BINDING SITE FOR RESIDUE NAG A1757
06	AC6	SOFTWARE	LYS A:207 , ARG A:210 , ASN A:257 , GLU A:424 , GLU A:425 , GLY A:427 , LEU A:428 , THR A:461 , ARG A:463 , SER A:501 , SER A:513 , GLY A:518 , ASN A:519 , ARG A:534 , ARG A:536 , TRP A:541 , TYR A:552 , HIS A:553 , LYS A:699 , TYR A:700 , ZN A:1751 , HOH A:2300 , HOH A:2501 , HOH A:2502 , HOH A:2503 , HOH A:2504 , HOH A:2505	BINDING SITE FOR RESIDUE ARK A1770
07	AC7	SOFTWARE	ASN A:76 , GLN A:95 , GLN A:99 , HOH A:2491	BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 76 RESIDUES 1755 TO 1756
08	AC8	SOFTWARE	HIS A:112 , TYR A:127 , GLU A:137 , ILE A:138 , ASN A:140 , ASN A:195 , SER A:197 , LYS A:240 , SER A:241 , TRP A:246 , GLU A:276 , ARG A:354 , ASN A:459 , SER A:472 , ASN A:476 , PHE A:565 , TYR A:566 , PRO A:594 , SER A:631 , SER A:634 , ASN A:638 , GLN A:740 , HOH A:2167 , HOH A:2171 , HOH A:2276 , HOH A:2277 , HOH A:2285 , HOH A:2329 , HOH A:2341 , HOH A:2492 , HOH A:2493 , HOH A:2494 , HOH A:2495 , HOH A:2496 , HOH A:2497 , HOH A:2498 , HOH A:2499 , HOH A:2500	BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 140 RESIDUES 1758 TO 1767
09	AC9	SOFTWARE	SER A:472 , ASN A:476 , PRO A:594 , HOH A:2285 , HOH A:2341 , HOH A:2493	BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 476 RESIDUES 1761 TO 1762
10	BC1	SOFTWARE	HIS A:112 , LYS A:240 , SER A:241 , GLU A:276 , ARG A:354 , SER A:631 , SER A:634 , ASN A:638 , GLN A:740 , HOH A:2167 , HOH A:2171 , HOH A:2494 , HOH A:2495 , HOH A:2496 , HOH A:2497 , HOH A:2498 , HOH A:2499	BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 638 RESIDUES 1763 TO 1766

(no "SS Bond" information available for 2XEI)

Asymmetric Unit

No.	Residues
1	Tyr A:242	-	Pro A:243
2	Gly A:330	-	Pro A:331
3	Asp A:387	-	Pro A:388

Asymmetric Unit (3, 3)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_024592	Y	75	H	FOLH1_HUMAN	Polymorphism	202676	A	Y	75	H
2	UniProt	VAR_012736	H	475	Y	FOLH1_HUMAN	Polymorphism	61886492	A	H	475	Y
3	UniProt	VAR_028882	V	627	L	FOLH1_HUMAN	Polymorphism	2988342	A	V	627	L

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (3, 6)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_024592	Y	75	H	FOLH1_HUMAN	Polymorphism	202676	A	Y	75	H
2	UniProt	VAR_012736	H	475	Y	FOLH1_HUMAN	Polymorphism	61886492	A	H	475	Y
3	UniProt	VAR_028882	V	627	L	FOLH1_HUMAN	Polymorphism	2988342	A	V	627	L

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(no "PROSITE Motif" information available for 2XEI)

Asymmetric Unit (18, 18)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENST00000256999	1a	ENSE00001364015	chr11:49230222-49229844	379	FOLH1_HUMAN	1-40	40	0	-	-
1.5	ENST00000256999	5	ENSE00001771797	chr11:49227724-49227619	106	FOLH1_HUMAN	40-75	36	1	A:55-75	21
1.6c	ENST00000256999	6c	ENSE00001804269	chr11:49221993-49221807	187	FOLH1_HUMAN	75-137	63	1	A:75-137	63
1.7a	ENST00000256999	7a	ENSE00001603272	chr11:49214446-49214345	102	FOLH1_HUMAN	138-171	34	1	A:138-171	34
1.8a	ENST00000256999	8a	ENSE00001701397	chr11:49208321-49208196	126	FOLH1_HUMAN	172-213	42	1	A:172-213	42
1.9b	ENST00000256999	9b	ENSE00001627795	chr11:49207407-49207221	187	FOLH1_HUMAN	214-276	63	1	A:214-276	63
1.10	ENST00000256999	10	ENSE00001652660	chr11:49204794-49204701	94	FOLH1_HUMAN	276-307	32	1	A:276-307	32
1.11b	ENST00000256999	11b	ENSE00001780619	chr11:49197509-49197411	99	FOLH1_HUMAN	307-340	34	1	A:307-340	34
1.12a	ENST00000256999	12a	ENSE00001612233	chr11:49196529-49196444	86	FOLH1_HUMAN	340-369	30	1	A:340-369	30
1.13	ENST00000256999	13	ENSE00001643735	chr11:49195028-49194909	120	FOLH1_HUMAN	369-409	41	1	A:369-409	41
1.14	ENST00000256999	14	ENSE00001765179	chr11:49192829-49192747	83	FOLH1_HUMAN	409-436	28	1	A:409-436	28
1.15	ENST00000256999	15	ENSE00001800342	chr11:49190810-49190747	64	FOLH1_HUMAN	437-458	22	1	A:437-458	22
1.16	ENST00000256999	16	ENSE00001739662	chr11:49186324-49186257	68	FOLH1_HUMAN	458-480	23	1	A:458-480	23
1.18	ENST00000256999	18	ENSE00001704015	chr11:49179595-49179504	92	FOLH1_HUMAN	481-511	31	1	A:481-511	31
1.19a	ENST00000256999	19a	ENSE00001639568	chr11:49178359-49178269	91	FOLH1_HUMAN	511-541	31	1	A:511-541	31
1.20a	ENST00000256999	20a	ENSE00001804599	chr11:49176044-49175780	265	FOLH1_HUMAN	542-630	89	1	A:542-630	89
1.21b	ENST00000256999	21b	ENSE00001637755	chr11:49175479-49175398	82	FOLH1_HUMAN	630-657	28	1	A:630-657 (gaps)	28
1.22	ENST00000256999	22	ENSE00001748529	chr11:49170283-49170191	93	FOLH1_HUMAN	657-688	32	1	A:657-688	32
1.23d	ENST00000256999	23d	ENSE00002199992	chr11:49168497-49168187	311	FOLH1_HUMAN	688-750	63	1	A:688-750	63

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:694
 aligned with FOLH1_HUMAN | Q04609 from UniProtKB/Swiss-Prot  Length:750

    Alignment length:696
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744      
          FOLH1_HUMAN    55 KHNMKAFLDELKAENIKKFLYNFTQIPHLAGTEQNFQLAKQIQSQWKEFGLDSVELAHYDVLLSYPNKTHPNYISIINEDGNEIFNTSLFEPPPPGYENVSDIVPPFSAFSPQGMPEGDLVYVNYARTEDFFKLERDMKINCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSDPADYFAPGVKSYPDGWNLPGGGVQRGNILNLNGAGDPLTPGYPANEYAYRRGIAEAVGLPSIPVHPIGYYDAQKLLEKMGGSAPPDSSWRGSLKVPYNVGPGFTGNFSTQKVKMHIHSTNEVTRIYNVIGTLRGAVEPDRYVILGGHRDSWVFGGIDPQSGAAVVHEIVRSFGTLKKEGWRPRRTILFASWDAEEFGLLGSTEWAEENSRLLQERGVAYINADSSIEGNYTLRVDCTPLMYSLVHNLTKELKSPDEGFEGKSLYESWTKKSPSPEFSGMPRISKLGSGNDFEVFFQRLGIASGRARYTKNWETNKFSGYPLYHSVYETYELVEKFYDPMFKYHLTVAQVRGGMVFELANSIVLPFDCRDYAVVLRKYADKIYSISMKHPQEMKTYSVSFDSLFSAVKNFTEIASKFSERLQDFDKSNPIVLRMMNDQLMFLERAFIDPLGLPDRPFYRHVIYAPSSHNKYAGESFPGIYDALFDIESKVDPSKAWGEVKRQIYVAAFTVQAAAETLSEVA 750
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------PA-2xeiA02 A:165-263                                                                               ----------------------------------------------------------------------------------------------------------Peptidase_M28-2xeiA01 A:370-560                                                                                                                                                                -----------------------------------------------------------------TFR_dimer-2xeiA03 A:626-749                                                                                                 - Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhh..eeeeeeeeeeeee.......eeeee.....eeee.....................ee.......ee.eee....hhhhhhhhhhh........eeeee....hhhhhhhhhhhh...eeeee.hhhhhh....................ee........................hhhhh.......eeeehhhhhhhhhh........hhhhh.............hhhhh..eeeee...eeeeeeeeeeeeee....eeeeeeeeeee..........hhhhhhhhhhhhhhhhhhhhh.....eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhheeeeee.........eeeeee...hhhhhhhhhhh...........hhhhhhhhhh..................hhhhhhhh...eeeeeeee...................hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.--.hhhhhhhhhhhhhhhhhhh................eeee..eeeeeeehhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------H---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Y-------------------------------------------------------------------------------------------------------------------------------------------------------L--------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.5  PDB: A:55-7--------------------------------------------------------------Exon 1.7a  PDB: A:138-171         Exon 1.8a  PDB: A:172-213 UniProt: 172-213--------------------------------------------------------------Exon 1.10  PDB: A:276-307       --------------------------------Exon 1.12a  PDB: A:340-369    ---------------------------------------Exon 1.14  PDB: A:409-436   Exon 1.15             ----------------------Exon 1.18  PDB: A:481-511      ------------------------------Exon 1.20a  PDB: A:542-630 UniProt: 542-630                                              --------------------------Exon 1.22  PDB: A:657-688       -------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --------------------Exon 1.6c  PDB: A:75-137 UniProt: 75-137                       ----------------------------------------------------------------------------Exon 1.9b  PDB: A:214-276 UniProt: 214-276                     ------------------------------Exon 1.11b  PDB: A:307-340        ----------------------------Exon 1.13  PDB: A:369-409                ------------------------------------------------Exon 1.16              ------------------------------Exon 1.19a  PDB: A:511-541     ----------------------------------------------------------------------------------------Exon 1.21b UniProt: 630-657 ------------------------------Exon 1.23d  PDB: A:688-750 UniProt: 688-750                     Transcript 1 (2)
                 2xei A  55 KHNMKAFLDELKAENIKKFLYNFTQIPHLAGTEQNFQLAKQIQSQWKEFGLDSVELAHYDVLLSYPNKTHPNYISIINEDGNEIFNTSLFEPPPPGYENVSDIVPPFSAFSPQGMPEGDLVYVNYARTEDFFKLERDMKINCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSDPADYFAPGVKSYPDGWNLPGGGVQRGNILNLNGAGDPLTPGYPANEYAYRRGIAEAVGLPSIPVHPIGYYDAQKLLEKMGGSAPPDSSWRGSLKVPYNVGPGFTGNFSTQKVKMHIHSTNEVTRIYNVIGTLRGAVEPDRYVILGGHRDSWVFGGIDPQSGAAVVHEIVRSFGTLKKEGWRPRRTILFASWDAEEFGLLGSTEWAEENSRLLQERGVAYINADSSIEGNYTLRVDCTPLMYSLVHNLTKELKSPDEGFEGKSLYESWTKKSPSPEFSGMPRISKLGSGNDFEVFFQRLGIASGRARYTKNWETNKFSGYPLYHSVYETYELVEKFYDPMFKYHLTVAQVRGGMVFELANSIVLPFDCRDYAVVLRKYADKIYSISMKHPQEMKTYSVSFDSLFSAVKNFTEIASKFSERLQDF--SNPIVLRMMNDQLMFLERAFIDPLGLPDRPFYRHVIYAPSSHNKYAGESFPGIYDALFDIESKVDPSKAWGEVKRQIYVAAFTVQAAAETLSEVA 750
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644        |- |     664       674       684       694       704       714       724       734       744      
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                653  |                                                                                              
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   656

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2XEI)

(no "CATH Domain" information available for 2XEI)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Peptidase_MH (119)

Family: Peptidase_M28 (38)

Homo sapiens (Human) (30)

Peptidase_M28-2xeiA01

A:370-560

Clan: no clan defined [family: PA] (15)

Family: PA (15)

Homo sapiens (Human) (12)

PA-2xeiA02

A:165-263

Clan: no clan defined [family: TFR_dimer] (12)

Family: TFR_dimer (12)

Homo sapiens (Human) (12)

TFR_dimer-2xeiA03

A:626-749

Asymmetric Unit(hide GO term definitions)

Chain A (FOLH1_HUMAN | Q04609)

molecular function
	GO:1904492	Ac-Asp-Glu binding	Interacting selectively and non-covalently with Ac-Asp-Glu.
	GO:0004180	carboxypeptidase activity	Catalysis of the hydrolysis of the terminal or penultimate peptide bond at the C-terminal end of a peptide or polypeptide.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016805	dipeptidase activity	Catalysis of the hydrolysis of a dipeptide.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0004181	metallocarboxypeptidase activity	Catalysis of the hydrolysis of C-terminal amino acid residues from a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
	GO:0008237	metallopeptidase activity	Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:1904493	tetrahydrofolyl-poly(glutamate) polymer binding	Interacting selectively and non-covalently with tetrahydrofolyl-poly(glutamate) polymer.
biological process
	GO:0035609	C-terminal protein deglutamylation	The removal of a C-terminal, gene-encoded glutamate residue from a protein.
	GO:0008652	cellular amino acid biosynthetic process	The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
	GO:0006760	folic acid-containing compound metabolic process	The chemical reactions and pathways involving a folic acid-containing compound, i.e. any of a group of heterocyclic compounds based on the pteroic acid skeleton conjugated with one or more L-glutamic acid or L-glutamate units.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
	GO:0009986	cell surface	The external part of the cell wall and/or plasma membrane.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0005887	integral component of plasma membrane	The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Asymmetric Unit
	Complete Structure
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	Ligands, Modified Residues, Ions
		ARK	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		BMA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		CA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		CL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		MAN	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		NAG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		ZN	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Asp A:387 - Pro A:388	[ RasMol ]
		Gly A:330 - Pro A:331	[ RasMol ]
		Tyr A:242 - Pro A:243	[ RasMol ]

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

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	2xei
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	3.4.17.21
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1z8l	CRYSTAL STRUCTURE OF PROSTATE-SPECIFIC MEMBRANE ANTIGEN, ATUMOR MARKER AND PEPTIDASE
2c6c	MEMBRANE-BOUND GLUTAMATE CARBOXYPEPTIDASE II ( GCPII) IN COMPLEX WITH GPI-18431 (S)-2-( 4-IODOBENZYLPHOSPHONOMETHYL)-PENTANEDIOIC ACID
2c6g	MEMBRANE-BOUND GLUTAMATE CARBOXYPEPTIDASE II ( GCPII) WITH BOUND GLUTAMATE
2c6p	MEMBRANE-BOUND GLUTAMATE CARBOXYPEPTIDASE II ( GCPII) IN COMPLEX WITH PHOSPHATE ANION
2cij	MEMBRANE-BOUND GLUTAMATE CARBOXYPEPTIDASE II ( GCPII) WITH BOUND METHIONINE
2jbj	MEMBRANE-BOUND GLUTAMATE CARBOXYPEPTIDASE II ( GCPII) IN COMPLEX WITH 2-PMPA (2- PHOSPHONOMETHYL-PENTANEDIOIC ACID)
2jbk	MEMBRANE-BOUND GLUTAMATE CARBOXYPEPTIDASE II ( GCPII) IN COMPLEX WITH QUISQUALIC ACID ( QUISQUALATE, ALPHA-AMINO-3,5-DIOXO-1,2,4 -OXADIAZOLIDINE-2-PROPANOIC ACID)
2xef	HUMAN GLUTAMATE CARBOXYPEPTIDASE II IN COMPLEX WITH ANTIBODY-RECRUITING MOLECULE ARM-P8
2xeg	HUMAN GLUTAMATE CARBOXYPEPTIDASE II IN COMPLEX WITH ANTIBODY-RECRUITING MOLECULE ARM-P4
2xej	HUMAN GLUTAMATE CARBOXYPEPTIDASE II IN COMPLEX WITH ARM-M4, UREA-BASED INHIBITOR

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (7, 18)

Sites (10, 10)

SS Bonds (0, 0)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (3, 3)

PROSITE Motifs (0, 0)

Exons (18, 18)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (3, 3)

Gene Ontology (22, 22)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File