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4MBY
Asym. Unit
Info
Asym.Unit (951 KB)
Biol.Unit 1 (480 KB)
Biol.Unit 2 (462 KB)
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(1)
Title
:
STRUCTURE OF B-LYMPHOTROPIC POLYOMAVIRUS VP1 IN COMPLEX WITH 3'-SIALYLLACTOSE
Authors
:
Z. M. Khan, U. Neu, T. Stehle
Date
:
21 Aug 13 (Deposition) - 04 Dec 13 (Release) - 22 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.48
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E (1x)
Biol. Unit 2: F,G,H,I,J (1x)
Keywords
:
Jelly Roll, Polyomavirus, Viral Capsid (Structural) Protein, Dna Encapsidation, Receptor Binding, Sialylated Oligosaccharides, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
U. Neu, Z. M. Khan, B. Schuch, A. S. Palma, Y. Liu, M. Pawlita, T. Feizi, T. Stehle
Structures Of B-Lymphotropic Polyomavirus Vp1 In Complex With Oligosaccharide Ligands.
Plos Pathog. V. 9 03714 2013
[
close entry info
]
Hetero Components
(7, 82)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1b: BETA-D-GLUCOSE (BGCb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
2i: CALCIUM ION (CAi)
2j: CALCIUM ION (CAj)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
3e: CHLORIDE ION (CLe)
3f: CHLORIDE ION (CLf)
3g: CHLORIDE ION (CLg)
3h: CHLORIDE ION (CLh)
3i: CHLORIDE ION (CLi)
3j: CHLORIDE ION (CLj)
4a: 1,2-ETHANEDIOL (EDOa)
4aa: 1,2-ETHANEDIOL (EDOaa)
4ab: 1,2-ETHANEDIOL (EDOab)
4ac: 1,2-ETHANEDIOL (EDOac)
4ad: 1,2-ETHANEDIOL (EDOad)
4ae: 1,2-ETHANEDIOL (EDOae)
4af: 1,2-ETHANEDIOL (EDOaf)
4b: 1,2-ETHANEDIOL (EDOb)
4c: 1,2-ETHANEDIOL (EDOc)
4d: 1,2-ETHANEDIOL (EDOd)
4e: 1,2-ETHANEDIOL (EDOe)
4f: 1,2-ETHANEDIOL (EDOf)
4g: 1,2-ETHANEDIOL (EDOg)
4h: 1,2-ETHANEDIOL (EDOh)
4i: 1,2-ETHANEDIOL (EDOi)
4j: 1,2-ETHANEDIOL (EDOj)
4k: 1,2-ETHANEDIOL (EDOk)
4l: 1,2-ETHANEDIOL (EDOl)
4m: 1,2-ETHANEDIOL (EDOm)
4n: 1,2-ETHANEDIOL (EDOn)
4o: 1,2-ETHANEDIOL (EDOo)
4p: 1,2-ETHANEDIOL (EDOp)
4q: 1,2-ETHANEDIOL (EDOq)
4r: 1,2-ETHANEDIOL (EDOr)
4s: 1,2-ETHANEDIOL (EDOs)
4t: 1,2-ETHANEDIOL (EDOt)
4u: 1,2-ETHANEDIOL (EDOu)
4v: 1,2-ETHANEDIOL (EDOv)
4w: 1,2-ETHANEDIOL (EDOw)
4x: 1,2-ETHANEDIOL (EDOx)
4y: 1,2-ETHANEDIOL (EDOy)
4z: 1,2-ETHANEDIOL (EDOz)
5a: BETA-D-GALACTOSE (GALa)
5b: BETA-D-GALACTOSE (GALb)
5c: BETA-D-GALACTOSE (GALc)
5d: BETA-D-GALACTOSE (GALd)
5e: BETA-D-GALACTOSE (GALe)
5f: BETA-D-GALACTOSE (GALf)
5g: BETA-D-GALACTOSE (GALg)
5h: BETA-D-GALACTOSE (GALh)
5i: BETA-D-GALACTOSE (GALi)
6a: ISOPROPYL ALCOHOL (IPAa)
6b: ISOPROPYL ALCOHOL (IPAb)
6c: ISOPROPYL ALCOHOL (IPAc)
6d: ISOPROPYL ALCOHOL (IPAd)
6e: ISOPROPYL ALCOHOL (IPAe)
6f: ISOPROPYL ALCOHOL (IPAf)
6g: ISOPROPYL ALCOHOL (IPAg)
6h: ISOPROPYL ALCOHOL (IPAh)
6i: ISOPROPYL ALCOHOL (IPAi)
6j: ISOPROPYL ALCOHOL (IPAj)
7a: O-SIALIC ACID (SIAa)
7b: O-SIALIC ACID (SIAb)
7c: O-SIALIC ACID (SIAc)
7d: O-SIALIC ACID (SIAd)
7e: O-SIALIC ACID (SIAe)
7f: O-SIALIC ACID (SIAf)
7g: O-SIALIC ACID (SIAg)
7h: O-SIALIC ACID (SIAh)
7i: O-SIALIC ACID (SIAi)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGC
2
Ligand/Ion
BETA-D-GLUCOSE
2
CA
10
Ligand/Ion
CALCIUM ION
3
CL
10
Ligand/Ion
CHLORIDE ION
4
EDO
32
Ligand/Ion
1,2-ETHANEDIOL
5
GAL
9
Ligand/Ion
BETA-D-GALACTOSE
6
IPA
10
Ligand/Ion
ISOPROPYL ALCOHOL
7
SIA
9
Ligand/Ion
O-SIALIC ACID
[
close Hetero Component info
]
Sites
(71, 71)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
64: HC1 (SOFTWARE)
65: HC2 (SOFTWARE)
66: HC3 (SOFTWARE)
67: HC4 (SOFTWARE)
68: HC5 (SOFTWARE)
69: HC6 (SOFTWARE)
70: HC7 (SOFTWARE)
71: HC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:46 , HOH A:716 , SER B:214 , GLU B:217 , HOH B:744 , HOH B:813
BINDING SITE FOR RESIDUE CA A 401
02
AC2
SOFTWARE
LYS A:181
BINDING SITE FOR RESIDUE CL A 402
03
AC3
SOFTWARE
GLN A:44 , SER A:114 , VAL A:115 , THR A:242 , ASN A:288 , VAL A:289 , THR A:290 , HOH A:631 , HOH A:828
BINDING SITE FOR RESIDUE EDO A 403
04
AC4
SOFTWARE
PRO A:174 , ASP A:175 , VAL A:177 , HOH A:619 , HOH A:706 , HOH A:841 , HOH A:842 , ASP E:175
BINDING SITE FOR RESIDUE EDO A 404
05
AC5
SOFTWARE
GLU A:217 , ASN A:218 , ARG A:220 , ASP A:247 , VAL A:251 , GLY A:252 , LEU A:254 , HOH A:845
BINDING SITE FOR RESIDUE EDO A 405
06
AC6
SOFTWARE
TRP A:110 , LYS A:293
BINDING SITE FOR RESIDUE EDO A 406
07
AC7
SOFTWARE
PHE A:153 , TYR A:222 , THR A:243 , IPA A:408
BINDING SITE FOR RESIDUE EDO A 407
08
AC8
SOFTWARE
HIS A:151 , PHE A:153 , TYR A:222 , SER A:224 , EDO A:407 , HOH A:592
BINDING SITE FOR RESIDUE IPA A 408
09
AC9
SOFTWARE
GLU B:46 , HOH B:684 , HOH B:775 , SER C:214 , GLU C:217 , HOH C:696 , HOH C:703
BINDING SITE FOR RESIDUE CA B 401
10
BC1
SOFTWARE
LYS B:181 , HOH B:738
BINDING SITE FOR RESIDUE CL B 402
11
BC2
SOFTWARE
GLN B:44 , SER B:114 , VAL B:115 , LYS B:116 , THR B:242 , ASN B:288 , THR B:290 , HOH B:517 , HOH B:591
BINDING SITE FOR RESIDUE EDO B 403
12
BC3
SOFTWARE
ASN B:55 , GLU B:60 , ASN B:67 , LYS B:82 , ASP B:83
BINDING SITE FOR RESIDUE EDO B 404
13
BC4
SOFTWARE
GLU B:217 , ASN B:218 , ARG B:220 , GLY B:252 , MET J:27
BINDING SITE FOR RESIDUE EDO B 405
14
BC5
SOFTWARE
GLU B:31 , ASN C:249 , GLY C:250 , VAL C:251 , HOH C:705 , GLY I:28 , GLY I:29
BINDING SITE FOR RESIDUE EDO B 406
15
BC6
SOFTWARE
LEU B:97 , LEU B:98 , ASN B:99 , GLY B:257 , ASP B:258
BINDING SITE FOR RESIDUE EDO B 407
16
BC7
SOFTWARE
ASN B:81 , LYS B:82 , HOH B:624
BINDING SITE FOR RESIDUE EDO B 408
17
BC8
SOFTWARE
PHE B:153 , TYR B:222 , GLY B:223 , HOH B:601
BINDING SITE FOR RESIDUE IPA B 409
18
BC9
SOFTWARE
GLU C:46 , HOH C:603 , SER D:214 , GLU D:217 , HOH D:672 , HOH D:719 , HOH D:759
BINDING SITE FOR RESIDUE CA C 401
19
CC1
SOFTWARE
LYS C:181 , HOH C:554 , HOH C:666
BINDING SITE FOR RESIDUE CL C 402
20
CC2
SOFTWARE
GLN C:44 , SER C:114 , VAL C:115 , THR C:242 , ASN C:288 , THR C:290 , HOH C:650 , HOH C:778
BINDING SITE FOR RESIDUE EDO C 403
21
CC3
SOFTWARE
ASN C:55 , GLU C:60 , ASN C:67 , ASP C:83 , HOH C:503
BINDING SITE FOR RESIDUE EDO C 404
22
CC4
SOFTWARE
LEU C:98 , ASN C:99 , GLY C:257 , ASP C:258
BINDING SITE FOR RESIDUE EDO C 405
23
CC5
SOFTWARE
HIS C:151 , PHE C:153 , TYR C:222 , SER C:224 , HOH C:601
BINDING SITE FOR RESIDUE IPA C 406
24
CC6
SOFTWARE
GLU D:46 , HOH D:671 , HOH D:755 , SER E:214 , GLU E:217 , HOH E:756
BINDING SITE FOR RESIDUE CA D 401
25
CC7
SOFTWARE
LYS D:181
BINDING SITE FOR RESIDUE CL D 402
26
CC8
SOFTWARE
LEU D:98 , ASN D:99 , MET D:102 , ASP D:258
BINDING SITE FOR RESIDUE EDO D 403
27
CC9
SOFTWARE
THR D:117 , ARG D:285 , HOH D:533 , HOH D:588 , HOH D:753
BINDING SITE FOR RESIDUE EDO D 404
28
DC1
SOFTWARE
HIS D:151 , PHE D:153 , TYR D:222 , GLY D:223 , SER D:224 , HOH D:588
BINDING SITE FOR RESIDUE IPA D 405
29
DC2
SOFTWARE
SER A:214 , GLU A:217 , HOH A:501 , HOH A:504 , HOH A:764 , GLU E:46 , HOH E:691
BINDING SITE FOR RESIDUE CA E 401
30
DC3
SOFTWARE
LYS E:181 , HOH E:574
BINDING SITE FOR RESIDUE CL E 402
31
DC4
SOFTWARE
GLN E:44 , SER E:114 , VAL E:115 , LYS E:116 , THR E:242 , ASN E:288 , THR E:290 , HOH E:683
BINDING SITE FOR RESIDUE EDO E 403
32
DC5
SOFTWARE
ASP A:175 , ASP E:175 , VAL E:177 , HOH E:679 , HOH E:759 , HOH E:770
BINDING SITE FOR RESIDUE EDO E 404
33
DC6
SOFTWARE
THR E:117 , ARG E:285 , IPA E:407 , HOH E:536 , HOH E:571 , HOH E:825
BINDING SITE FOR RESIDUE EDO E 405
34
DC7
SOFTWARE
GLU E:217 , ASN E:218 , ARG E:220 , ASP E:247 , GLY E:252 , MET G:27 , HOH G:614
BINDING SITE FOR RESIDUE EDO E 406
35
DC8
SOFTWARE
HIS E:151 , PHE E:153 , TYR E:222 , SER E:224 , EDO E:405 , HOH E:571
BINDING SITE FOR RESIDUE IPA E 407
36
DC9
SOFTWARE
GLU F:46 , HOH F:679 , SER G:214 , GLU G:217 , HOH G:501 , HOH G:633 , HOH G:679
BINDING SITE FOR RESIDUE CA F 401
37
EC1
SOFTWARE
LYS F:181 , HOH F:703
BINDING SITE FOR RESIDUE CL F 402
38
EC2
SOFTWARE
MET A:27 , GLU F:217 , ASN F:218 , ARG F:220 , GLY F:252
BINDING SITE FOR RESIDUE EDO F 403
39
EC3
SOFTWARE
HIS F:151 , PHE F:153 , TYR F:222 , SER F:224 , HOH F:740
BINDING SITE FOR RESIDUE IPA F 404
40
EC4
SOFTWARE
GLU G:46 , HOH G:640 , SER H:214 , GLU H:217 , HOH H:502 , HOH H:642 , HOH H:690
BINDING SITE FOR RESIDUE CA G 401
41
EC5
SOFTWARE
LYS G:181 , HOH G:643
BINDING SITE FOR RESIDUE CL G 402
42
EC6
SOFTWARE
THR G:117 , ARG G:285 , IPA G:405 , HOH G:522 , HOH G:591
BINDING SITE FOR RESIDUE EDO G 403
43
EC7
SOFTWARE
HOH E:611 , GLU G:217 , ASN G:218 , ARG G:220 , VAL G:251 , GLY G:252
BINDING SITE FOR RESIDUE EDO G 404
44
EC8
SOFTWARE
HIS G:151 , PHE G:153 , GLY G:223 , SER G:224 , EDO G:403 , HOH G:591 , HOH G:723
BINDING SITE FOR RESIDUE IPA G 405
45
EC9
SOFTWARE
GLU H:46 , HOH H:635 , SER I:214 , GLU I:217 , HOH I:501 , HOH I:674
BINDING SITE FOR RESIDUE CA H 401
46
FC1
SOFTWARE
LYS H:181 , HOH H:651
BINDING SITE FOR RESIDUE CL H 402
47
FC2
SOFTWARE
THR H:117 , ARG H:285 , IPA H:406 , HOH H:537 , HOH H:574 , HOH H:620
BINDING SITE FOR RESIDUE EDO H 403
48
FC3
SOFTWARE
GLY D:29 , GLU G:31 , LEU G:33 , ASN H:249 , ARG H:294 , HOH H:697
BINDING SITE FOR RESIDUE EDO H 404
49
FC4
SOFTWARE
MET D:27 , GLU H:217 , ASN H:218 , ARG H:220 , GLY H:252
BINDING SITE FOR RESIDUE EDO H 405
50
FC5
SOFTWARE
HIS H:151 , PHE H:153 , TYR H:222 , SER H:224 , EDO H:403 , HOH H:574
BINDING SITE FOR RESIDUE IPA H 406
51
FC6
SOFTWARE
GLU I:46 , SER J:214 , HOH J:503 , HOH J:513 , HOH J:716
BINDING SITE FOR RESIDUE CA I 401
52
FC7
SOFTWARE
LYS I:181
BINDING SITE FOR RESIDUE CL I 402
53
FC8
SOFTWARE
LEU I:98 , ASN I:99 , GLY I:257 , ASP I:258
BINDING SITE FOR RESIDUE EDO I 403
54
FC9
SOFTWARE
THR I:117 , ARG I:285 , HOH I:554 , HOH I:564 , HOH I:579
BINDING SITE FOR RESIDUE EDO I 404
55
GC1
SOFTWARE
HIS I:151 , PHE I:153 , TYR I:222 , SER I:224 , HOH I:579
BINDING SITE FOR RESIDUE IPA I 405
56
GC2
SOFTWARE
SER F:214 , GLU F:217 , HOH F:502 , HOH F:503 , GLU J:46 , HOH J:658 , HOH J:751
BINDING SITE FOR RESIDUE CA J 401
57
GC3
SOFTWARE
LYS J:181
BINDING SITE FOR RESIDUE CL J 402
58
GC4
SOFTWARE
GLN J:44 , SER J:114 , VAL J:115 , LYS J:116 , THR J:242 , ASN J:288 , VAL J:289 , THR J:290 , HOH J:686
BINDING SITE FOR RESIDUE EDO J 403
59
GC5
SOFTWARE
LEU J:98 , ASN J:99 , GLY J:257 , ASP J:258 , EDO J:405
BINDING SITE FOR RESIDUE EDO J 404
60
GC6
SOFTWARE
ASN J:99 , ILE J:107 , LEU J:108 , LYS J:256 , GLY J:257 , ASP J:258 , EDO J:404
BINDING SITE FOR RESIDUE EDO J 405
61
GC7
SOFTWARE
THR J:117 , ARG J:285 , HOH J:538 , HOH J:616
BINDING SITE FOR RESIDUE EDO J 406
62
GC8
SOFTWARE
PHE J:153 , TYR J:222 , SER J:224 , HOH J:616
BINDING SITE FOR RESIDUE IPA J 407
63
GC9
SOFTWARE
LEU A:62 , TYR A:65 , GLN A:130 , GLY A:131 , HIS A:271 , ASN A:273 , TYR A:274 , HOH A:556 , HOH A:617 , HOH A:653 , HOH A:669 , HOH A:686 , HOH A:720 , HOH A:724 , HOH A:786 , SER B:74 , LYS B:75 , HOH B:663
BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 409 TO 410
64
HC1
SOFTWARE
TYR B:65 , GLN B:130 , GLY B:131 , HIS B:271 , ASN B:273 , TYR B:274 , HOH B:573 , HOH B:630 , HOH B:669 , HOH B:728 , HOH B:779 , HOH B:817 , HOH B:818 , SER C:74 , LYS C:75 , HOH C:727
BINDING SITE FOR CHAIN B OF POLYSACCHARIDE RESIDUES 410 TO 411
65
HC2
SOFTWARE
LEU C:62 , TYR C:65 , GLN C:130 , GLY C:131 , HIS C:271 , ASN C:273 , TYR C:274 , HOH C:505 , HOH C:619 , HOH C:628 , HOH C:629 , HOH C:742 , HOH C:780 , HOH C:814 , SER D:74 , LYS D:75
BINDING SITE FOR CHAIN C OF POLYSACCHARIDE RESIDUES 407 TO 408
66
HC3
SOFTWARE
TYR D:65 , GLN D:130 , GLY D:131 , HIS D:271 , ASN D:273 , TYR D:274 , HOH D:627 , HOH D:630 , HOH D:635 , HOH D:706 , HOH D:743 , HOH D:746 , HOH D:751 , HOH D:761 , PHE E:73 , SER E:74 , LYS E:75
BINDING SITE FOR CHAIN D OF POLYSACCHARIDE RESIDUES 406 TO 407
67
HC4
SOFTWARE
SER A:74 , LYS A:75 , LEU E:62 , TYR E:65 , GLN E:130 , GLY E:131 , HIS E:271 , ASN E:273 , TYR E:274 , HOH E:628 , HOH E:634 , HOH E:648 , HOH E:650 , HOH E:664 , HOH E:677 , HOH E:758 , HOH E:791 , HOH E:824 , HOH E:829
BINDING SITE FOR CHAIN E OF POLYSACCHARIDE RESIDUES 408 TO 409
68
HC5
SOFTWARE
TYR G:65 , GLN G:130 , GLY G:131 , HIS G:271 , ASN G:273 , TYR G:274 , HOH G:573 , HOH G:600 , HOH G:644 , HOH G:667 , HOH G:724 , PHE H:73 , SER H:74 , LYS H:75
BINDING SITE FOR CHAIN G OF POLYSACCHARIDE RESIDUES 406 TO 407
69
HC6
SOFTWARE
LEU H:62 , TYR H:65 , GLN H:130 , GLY H:131 , HIS H:271 , ASN H:273 , TYR H:274 , HOH H:575 , HOH H:638 , HOH H:657 , HOH H:658 , HOH H:666 , HOH H:685 , HOH H:687 , HOH H:731 , PHE I:73 , SER I:74 , LYS I:75
BINDING SITE FOR CHAIN H OF POLYSACCHARIDE RESIDUES 407 TO 408
70
HC7
SOFTWARE
LEU I:62 , TYR I:65 , GLN I:130 , GLY I:131 , HIS I:271 , ASN I:273 , TYR I:274 , HOH I:566 , HOH I:575 , HOH I:582 , HOH I:589 , HOH I:597 , HOH I:616 , HOH I:655 , HOH I:658 , HOH I:668 , HOH I:713 , PHE J:73 , SER J:74 , LYS J:75
BINDING SITE FOR CHAIN I OF POLYSACCHARIDE RESIDUES 406 TO 408
71
HC8
SOFTWARE
SER F:74 , LYS F:75 , LEU J:62 , TYR J:65 , GLN J:130 , GLY J:131 , HIS J:271 , ASN J:273 , TYR J:274 , HOH J:572 , HOH J:607 , HOH J:626 , HOH J:637 , HOH J:679 , HOH J:688 , HOH J:690 , HOH J:697 , HOH J:723 , HOH J:733 , HOH J:752
BINDING SITE FOR CHAIN J OF POLYSACCHARIDE RESIDUES 408 TO 410
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 10)
Info
All SCOP Domains
1a: SCOP_d4mbya_ (A:)
1b: SCOP_d4mbyb_ (B:)
1c: SCOP_d4mbyc_ (C:)
1d: SCOP_d4mbyd_ (D:)
1e: SCOP_d4mbye_ (E:)
1f: SCOP_d4mbyf_ (F:)
1g: SCOP_d4mbyg_ (G:)
1h: SCOP_d4mbyh_ (H:)
1i: SCOP_d4mbyi_ (I:)
1j: SCOP_d4mbyj_ (J:)
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Class
:
All beta proteins
(24004)
Fold
:
Nucleoplasmin-like/VP (viral coat and capsid proteins)
(278)
Superfamily
:
Group I dsDNA viruses
(30)
Family
:
Papovaviridae-like VP
(19)
Protein domain
:
automated matches
(12)
Human polyomavirus 9 [TaxId: 943908]
(7)
1a
d4mbya_
A:
1b
d4mbyb_
B:
1c
d4mbyc_
C:
1d
d4mbyd_
D:
1e
d4mbye_
E:
1f
d4mbyf_
F:
1g
d4mbyg_
G:
1h
d4mbyh_
H:
1i
d4mbyi_
I:
1j
d4mbyj_
J:
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Asymmetric Unit 1
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