4LQG - JenaLib

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Title :   X-RAY STRUCTURE OF HUMAN GLUTAMATE CARBOXYPEPTIDASE II (GCPII) IN COMPLEX WITH A PHOSPHORAMIDATE INHIBITOR CTT1056

Authors :   C. Barinka, L. Skultetyova

Date :   18 Jul 13 (Deposition) - 31 Dec 14 (Release) - 06 Jul 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.77

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Peptidase, Hydrolase, Metallopeptidase, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Dannoon, T. Ganguly, H. Cahaya, J. J. Geruntho, M. S. Galliher, S. K. Beyer, C. J. Choy, M. R. Hopkins, M. Regan, J. E. Blecha, L. Skultetyova, C. R. Drake, S. Jivan, C. Barinka, E. F. Jones, C. E. Berkman, H. F. Vanbrocklin
Structure-Activity Relationship Of (18)F-Labeled Phosphoramidate Peptidomimetic Prostate-Specific Membrane Antigen (Psma)-Targeted Inhibitor Analogues For Pet Imaging Of Prostate Cancer.
J. Med. Chem. V. 59 5684 2016
PubMed-ID: 27228467 | Reference-DOI: 10.1021/ACS.JMEDCHEM.5B01850

Molecule 1 - GLUTAMATE CARBOXYPEPTIDASE 2
	Chains	:	A
	EC Number	:	3.4.17.21
	Engineered	:	YES
	Expression System	:	DROSOPHILA MELANOGASTER
	Expression System Strain	:	SCHNEIDER S2 CELLS
	Expression System Taxid	:	7227
	Expression System Vector Type	:	PLASMID
	Gene	:	FOLH, FOLH1, GIG27, NAALAD1, PSM, PSMA
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	CELL GROWTH-INHIBITING GENE 27 PROTEIN, FOLATE HYDROLASE 1, FOLYLPOLY-GAMMA-GLUTAMATE CARBOXYPEPTIDASE, FGCP, GLUTAMATE CARBOXYPEPTIDASE II, GCPII, MEMBRANE GLUTAMATE CARBOXYPEPTIDASE, MGCP, N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE I, NAALADASE I, PROSTATE-SPECIFIC MEMBRANE ANTIGEN, PSM, PSMA, PTEROYLPOLY-GAMMA- GLUTAMATE CARBOXYPEPTIDASE

		1
Asymmetric Unit	:	A
Biological Unit 1 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (8, 23)

No.	Name	Count	Type	Full Name
1	BMA	2	Ligand/Ion	BETA-D-MANNOSE
2	CA	1	Ligand/Ion	CALCIUM ION
3	CL	1	Ligand/Ion	CHLORIDE ION
4	CTW	1	Ligand/Ion	N-(4-FLUOROBENZOYL)-L-GAMMA-GLUTAMYL-5-{[(S)-{[(1S)-1,3-DICARBOXYPROPYL]AMINO}(HYDROXY)PHOSPHORYL]OXY}-L-NORVALINE
5	FUC	2	Ligand/Ion	ALPHA-L-FUCOSE
6	MAN	2	Ligand/Ion	ALPHA-D-MANNOSE
7	NAG	12	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
8	ZN	2	Ligand/Ion	ZINC ION

Biological Unit 1 (5, 38)

No.	Name	Count	Type	Full Name
1	BMA	4	Ligand/Ion	BETA-D-MANNOSE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	CTW	2	Ligand/Ion	N-(4-FLUOROBENZOYL)-L-GAMMA-GLUTAMYL-5-{[(S)-{[(1S)-1,3-DICARBOXYPROPYL]AMINO}(HYDROXY)PHOSPHORYL]OXY}-L-NORVALINE
5	FUC	4	Ligand/Ion	ALPHA-L-FUCOSE
6	MAN	4	Ligand/Ion	ALPHA-D-MANNOSE
7	NAG	24	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
8	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (23, 23)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:387 , GLU A:425 , HIS A:553 , ZN A:802 , CTW A:823	BINDING SITE FOR RESIDUE ZN A 801
02	AC2	SOFTWARE	HIS A:377 , ASP A:387 , GLU A:425 , ASP A:453 , ZN A:801 , CTW A:823	BINDING SITE FOR RESIDUE ZN A 802
03	AC3	SOFTWARE	THR A:269 , TYR A:272 , GLU A:433 , GLU A:436 , HOH A:905	BINDING SITE FOR RESIDUE CA A 803
04	AC4	SOFTWARE	ASN A:451 , ASP A:453 , ARG A:534 , ARG A:536 , HOH A:920	BINDING SITE FOR RESIDUE CL A 804
05	AC5	SOFTWARE	ASN A:76 , GLN A:79 , GLN A:95 , GLN A:99 , NAG A:806 , HOH A:1138 , HOH A:1440	BINDING SITE FOR RESIDUE NAG A 805
06	AC6	SOFTWARE	NAG A:805 , HOH A:1145	BINDING SITE FOR RESIDUE NAG A 806
07	AC7	SOFTWARE	ASN A:121 , THR A:123 , HIS A:124 , THR A:349 , NAG A:808 , FUC A:809	BINDING SITE FOR RESIDUE NAG A 807
08	AC8	SOFTWARE	NAG A:807 , FUC A:809	BINDING SITE FOR RESIDUE NAG A 808
09	AC9	SOFTWARE	THR A:123 , HIS A:124 , NAG A:807 , NAG A:808	BINDING SITE FOR RESIDUE FUC A 809
10	BC1	SOFTWARE	TYR A:127 , GLU A:137 , ILE A:138 , ASN A:140 , NAG A:811 , FUC A:812	BINDING SITE FOR RESIDUE NAG A 810
11	BC2	SOFTWARE	NAG A:810 , HOH A:1267	BINDING SITE FOR RESIDUE NAG A 811
12	BC3	SOFTWARE	NAG A:810	BINDING SITE FOR RESIDUE FUC A 812
13	BC4	SOFTWARE	ASN A:195 , SER A:197	BINDING SITE FOR RESIDUE NAG A 813
14	BC5	SOFTWARE	TRP A:246 , ASN A:459 , PHE A:565 , TYR A:566 , HOH A:976 , HOH A:1160 , HOH A:1468 , HOH A:1471 , HOH A:1476	BINDING SITE FOR RESIDUE NAG A 814
15	BC6	SOFTWARE	SER A:472 , ASN A:476 , PRO A:594 , NAG A:816 , HOH A:1206	BINDING SITE FOR RESIDUE NAG A 815
16	BC7	SOFTWARE	NAG A:815 , BMA A:817 , HOH A:1110	BINDING SITE FOR RESIDUE NAG A 816
17	BC8	SOFTWARE	GLN A:651 , NAG A:816 , HOH A:1314	BINDING SITE FOR RESIDUE BMA A 817
18	BC9	SOFTWARE	SER A:631 , SER A:634 , ASN A:638 , GLN A:740 , NAG A:819 , HOH A:1024 , HOH A:1058 , HOH A:1231	BINDING SITE FOR RESIDUE NAG A 818
19	CC1	SOFTWARE	GLU A:276 , NAG A:818 , BMA A:820 , HOH A:1173	BINDING SITE FOR RESIDUE NAG A 819
20	CC2	SOFTWARE	HIS A:112 , GLU A:276 , ARG A:354 , NAG A:819 , MAN A:821 , MAN A:822	BINDING SITE FOR RESIDUE BMA A 820
21	CC3	SOFTWARE	PHE A:235 , LYS A:240 , SER A:241 , GLU A:276 , BMA A:820 , HOH A:1086 , HOH A:1229 , HOH A:1232 , HOH A:1406	BINDING SITE FOR RESIDUE MAN A 821
22	CC4	SOFTWARE	LEU A:110 , BMA A:820 , HOH A:1120 , HOH A:1156 , HOH A:1369	BINDING SITE FOR RESIDUE MAN A 822
23	CC5	SOFTWARE	ARG A:210 , ASN A:257 , HIS A:377 , ASP A:387 , GLU A:424 , GLU A:425 , GLY A:427 , ASP A:453 , ARG A:463 , GLY A:518 , ASN A:519 , ARG A:534 , ARG A:536 , TRP A:541 , TYR A:552 , HIS A:553 , LYS A:699 , TYR A:700 , ZN A:801 , ZN A:802 , HOH A:908 , HOH A:1070 , HOH A:1446 , HOH A:1450 , HOH A:1487 , HOH A:1489	BINDING SITE FOR RESIDUE CTW A 823

(no "SS Bond" information available for 4LQG)

Asymmetric Unit

No.	Residues
1	Tyr A:242	-	Pro A:243
2	Gly A:330	-	Pro A:331
3	Asp A:387	-	Pro A:388

(no "SAP(SNP)/Variant" information available for 4LQG)

(no "PROSITE Motif" information available for 4LQG)

(no "Exon" information available for 4LQG)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:692
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh..eeeeeeeeeeeee.......eeeee.....eeee.....................ee.......ee.eee....hhhhhhhhhhh........eeeee....hhhhhhhhhhhh...eeeee.hhhhhh....................ee........................hhhhh.......eeeehhhhhhhhhh........hhhhh.............hhhhh..eeeee...eeeeeeeeeeeeee....eeeeeeeeeee..........hhhhhhhhhhhhhhhhhhhhh.....eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhheeeeee.........eeeeee...hhhhhhhhhhh...........hhhhhhhhhh..................hhhhhhh....eeeeeeee.................hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh.hhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.................eeee..eeeeeeehhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lqg A  55 KHNMKAFLDELKAENIKKFLYNFTQIPHLAGTEQNFQLAKQIQSQWKEFGLDSVELAHYDVLLSYPNKTHPNYISIINEDGNEIFNTSLFEPPPPGYENVSDIVPPFSAFSPQGMPEGDLVYVNYARTEDFFKLERDMKINCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSDPADYFAPGVKSYPDGWNLPGGGVQRGNILNLNGAGDPLTPGYPANEYAYRRGIAEAVGLPSIPVHPIGYYDAQKLLEKMGGSAPPDSSWRGSLKVPYNVGPGFTGNFSTQKVKMHIHSTNEVTRIYNVIGTLRGAVEPDRYVILGGHRDSWVFGGIDPQSGAAVVHEIVRSFGTLKKEGWRPRRTILFASWDAEEFGLLGSTEWAEENSRLLQERGVAYINADSSIEGNYTLRVDCTPLMYSLVHNLTKELKSPDEGFEGKSLYESWTKKSPSPEFSGMPRISKLGSGNDFEVFFQRLGIASGRARYTKNWETNSGYPLYHSVYETYELVEKFYDPMFKYHLTVAQVRGGMVFELANSIVLPFDCRDYAVVLRKYADKIYSISMKHPQEMKTYSVSFDSLFSAVKNFTEIASKFSERLQDFSNPIVLRMMNDQLMFLERAFIDPLGLPDRPFYRHVIYAPSSHNKYAGESFPGIYDALFDIESKVDPSKAWGEVKRQIYVAAFTVQAAAETLSEVA 750
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544|      556       566       576       586       596       606       616       626       636       646      |658       668       678       688       698       708       718       728       738       748  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   544|                                                                                                       653|                                                                                              
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    547                                                                                                        656

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4LQG)

(no "CATH Domain" information available for 4LQG)

(no "Pfam Domain" information available for 4LQG)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Cis Peptide Bonds
		Asp A:387 - Pro A:388	[ RasMol ]
		Gly A:330 - Pro A:331	[ RasMol ]
		Tyr A:242 - Pro A:243	[ RasMol ]

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	4lqg
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(no "Related Entries Specified in the PDB File" available for 4LQG)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (8, 23)

Sites (23, 23)

SS Bonds (0, 0)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Gene Ontology (22, 22)

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