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(-) Description

Title :  CRYSTAL STRUCTURE OF THE OUTER MEMBRANE DECAHEME CYTOCHROME OMCA
 
Authors :  M. J. Edwards, N. Baiden, T. A. Clarke
Date :  10 Jul 13  (Deposition) - 16 Apr 14  (Release) - 09 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Greek Key Beta Barrel, Electron Transport C-Type Cytochrome, Outer Membrane, Electron Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. J. Edwards, N. Baiden, T. A. Clarke, D. J. Richardson
Insights Into Electron Transfer At The Microbe-Mineral Interface: The X-Ray Crystal Structures Of Shewanella Oneidensis Mtrc And Omca
Febs Letters 2014
PubMed: search

(-) Compounds

Molecule 1 - EXTRACELLULAR IRON OXIDE RESPIRATORY SYSTEM SURFACE DECAHEME CYTOCHROME C COMPONENT OMCA
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 28-735
    Gene: OMCA, SO_1779
    Organism Scientific: SHEWANELLA ONEIDENSIS
    Organism Taxid: 211586
    Strain: MR-1

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 64)

Asymmetric Unit (3, 64)
No.NameCountTypeFull Name
1CA8Ligand/IonCALCIUM ION
2DMS16Ligand/IonDIMETHYL SULFOXIDE
3HEC40Ligand/IonHEME C
Biological Unit 1 (2, 14)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2DMS4Ligand/IonDIMETHYL SULFOXIDE
3HEC10Ligand/IonHEME C
Biological Unit 2 (2, 14)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2DMS4Ligand/IonDIMETHYL SULFOXIDE
3HEC10Ligand/IonHEME C
Biological Unit 3 (2, 14)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2DMS4Ligand/IonDIMETHYL SULFOXIDE
3HEC10Ligand/IonHEME C
Biological Unit 4 (2, 14)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2DMS4Ligand/IonDIMETHYL SULFOXIDE
3HEC10Ligand/IonHEME C

(-) Sites  (64, 64)

Asymmetric Unit (64, 64)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREALA A:227 , CYS A:228 , CYS A:231 , HIS A:232 , LEU A:237 , HIS A:277 , TYR A:308 , TYR A:313 , GLN A:315 , GLY A:624 , VAL A:625 , GLN A:626 , SER A:627 , THR A:629 , HOH A:976 , HOH A:1085BINDING SITE FOR RESIDUE HEC A 801
02AC2SOFTWAREGLN A:142 , VAL A:145 , LEU A:239 , HIS A:240 , ARG A:244 , ASN A:249 , CYS A:250 , CYS A:253 , HIS A:254 , ASP A:260 , ILE A:267 , MET A:272 , ILE A:299 , GLY A:300 , TYR A:308 , CA A:811 , HOH A:1085 , HOH A:1140 , HOH A:1295BINDING SITE FOR RESIDUE HEC A 802
03AC3SOFTWAREARG A:220 , THR A:270 , ILE A:273 , HIS A:274 , HIS A:277 , TYR A:313 , CYS A:321 , CYS A:324 , HIS A:325 , LEU A:337 , PHE A:338 , SER A:343 , HIS A:384 , HEC A:804 , HOH A:910 , HOH A:915 , HOH A:952 , HOH A:961 , HOH A:969 , HOH A:1029 , HOH A:1112BINDING SITE FOR RESIDUE HEC A 803
04AC4SOFTWAREHIS A:274 , LYS A:278 , ALA A:318 , ALA A:346 , CYS A:347 , CYS A:350 , HIS A:351 , HIS A:368 , ALA A:380 , ARG A:383 , HIS A:384 , VAL A:387 , HEC A:803 , HEC A:805 , HOH A:922 , HOH A:1077 , HOH A:1174 , HOH A:1270BINDING SITE FOR RESIDUE HEC A 804
05AC5SOFTWAREHIS A:351 , GLU A:353 , PRO A:355 , HIS A:359 , SER A:361 , THR A:362 , ASP A:363 , CYS A:364 , CYS A:367 , HIS A:368 , TYR A:374 , THR A:377 , ARG A:383 , TYR A:517 , HEC A:804 , HOH A:970 , HOH A:977 , HOH A:1007 , DMS B:901BINDING SITE FOR RESIDUE HEC A 805
06AC6SOFTWAREHIS A:312 , PRO A:314 , LYS A:316 , LYS A:565 , CYS A:566 , CYS A:569 , HIS A:570 , ILE A:574 , PHE A:608 , SER A:615 , GLY A:617 , HIS A:618 , VAL A:630 , THR A:637 , HEC A:807 , DMS A:814 , HOH A:1074BINDING SITE FOR RESIDUE HEC A 806
07AC7SOFTWARETYR A:442 , TYR A:460 , VAL A:575 , HIS A:576 , TYR A:577 , ASP A:578 , CYS A:583 , CYS A:586 , HIS A:587 , LYS A:591 , THR A:606 , LYS A:611 , HEC A:806 , HOH A:1074 , HOH A:1169BINDING SITE FOR RESIDUE HEC A 807
08AC8SOFTWAREARG A:557 , ARG A:558 , ILE A:560 , ILE A:561 , GLN A:584 , PHE A:608 , ALA A:609 , ALA A:612 , HIS A:613 , HIS A:618 , LYS A:632 , ASP A:634 , CYS A:635 , CYS A:638 , HIS A:639 , ILE A:650 , ARG A:654 , ARG A:658 , HIS A:733 , HOH A:1091 , HOH A:1275BINDING SITE FOR RESIDUE HEC A 808
09AC9SOFTWAREHIS A:613 , LYS A:632 , ALA A:680 , CYS A:681 , CYS A:684 , HIS A:685 , TYR A:688 , HIS A:724 , LEU A:729 , ALA A:732 , HIS A:733 , HEC A:810 , HOH A:1124BINDING SITE FOR RESIDUE HEC A 809
10BC1SOFTWAREHIS A:696 , ILE A:697 , ASN A:700 , SER A:719 , CYS A:720 , CYS A:723 , HIS A:724 , HEC A:809BINDING SITE FOR RESIDUE HEC A 810
11BC2SOFTWAREASP A:260 , GLU A:262 , ILE A:299 , HEC A:802 , HOH A:1294 , HOH A:1295BINDING SITE FOR RESIDUE CA A 811
12BC3SOFTWAREHOH A:1232 , HOH A:1233 , HOH A:1234 , HOH A:1296 , HOH A:1297BINDING SITE FOR RESIDUE CA A 812
13BC4SOFTWAREILE A:404 , TRP A:545 , GLY A:547 , THR A:548 , THR A:550 , HOH A:1253BINDING SITE FOR RESIDUE DMS A 813
14BC5SOFTWAREHIS A:312 , GLU A:616 , GLY A:617 , GLY A:624 , HEC A:806BINDING SITE FOR RESIDUE DMS A 814
15BC6SOFTWAREGLN A:233 , ASP A:634 , ASN A:735BINDING SITE FOR RESIDUE DMS A 815
16BC7SOFTWARETYR A:374 , GLY A:375 , TYR A:517 , HOH A:1214 , HIS B:358 , HIS B:359 , HEC B:906BINDING SITE FOR RESIDUE DMS A 816
17BC8SOFTWAREHIS A:358 , HIS A:359 , HEC A:805 , GLY B:375 , TYR B:517 , HOH B:1151BINDING SITE FOR RESIDUE DMS B 901
18BC9SOFTWAREALA B:227 , CYS B:228 , CYS B:231 , HIS B:232 , LEU B:237 , HIS B:277 , TYR B:308 , TYR B:313 , PRO B:314 , GLN B:315 , CYS B:324 , GLY B:624 , VAL B:625 , GLN B:626 , SER B:627 , THR B:629 , HOH B:1028 , HOH B:1344 , HOH B:1348BINDING SITE FOR RESIDUE HEC B 902
19CC1SOFTWAREGLN B:142 , LEU B:239 , HIS B:240 , ARG B:244 , ASN B:249 , CYS B:250 , CYS B:253 , HIS B:254 , ASP B:260 , ILE B:267 , MET B:272 , ILE B:298 , ILE B:299 , GLY B:300 , ILE B:306 , TYR B:308 , CA B:912 , HOH B:1138 , HOH B:1142 , HOH B:1420BINDING SITE FOR RESIDUE HEC B 903
20CC2SOFTWAREARG B:220 , PHE B:269 , THR B:270 , ILE B:273 , HIS B:274 , HIS B:277 , TYR B:313 , CYS B:324 , HIS B:325 , LEU B:337 , PHE B:338 , SER B:343 , HIS B:384 , HEC B:905 , HOH B:1020 , HOH B:1025 , HOH B:1042 , HOH B:1255 , HOH B:1257 , HOH B:1326BINDING SITE FOR RESIDUE HEC B 904
21CC3SOFTWAREHIS B:274 , LYS B:278 , ALA B:346 , CYS B:347 , CYS B:350 , HIS B:351 , HIS B:368 , ALA B:380 , ARG B:383 , HIS B:384 , VAL B:387 , HEC B:904 , HEC B:906 , HOH B:1051 , HOH B:1287 , HOH B:1381BINDING SITE FOR RESIDUE HEC B 905
22CC4SOFTWAREDMS A:816 , CYS B:347 , HIS B:351 , GLU B:353 , PRO B:355 , HIS B:359 , SER B:361 , THR B:362 , ASP B:363 , CYS B:364 , CYS B:367 , HIS B:368 , THR B:377 , ARG B:383 , HEC B:905 , HOH B:1068 , HOH B:1105 , HOH B:1137 , HOH B:1381BINDING SITE FOR RESIDUE HEC B 906
23CC5SOFTWAREHIS B:312 , PRO B:314 , LYS B:316 , LYS B:565 , CYS B:566 , CYS B:569 , HIS B:570 , ILE B:574 , PHE B:608 , SER B:615 , GLY B:617 , HIS B:618 , VAL B:630 , THR B:637 , CYS B:638 , HEC B:908 , DMS B:915BINDING SITE FOR RESIDUE HEC B 907
24CC6SOFTWARETYR B:442 , TYR B:460 , VAL B:575 , HIS B:576 , TYR B:577 , CYS B:583 , CYS B:586 , HIS B:587 , LYS B:591 , LYS B:594 , THR B:606 , LYS B:611 , HEC B:907 , HOH B:1099BINDING SITE FOR RESIDUE HEC B 908
25CC7SOFTWAREARG B:557 , ARG B:558 , ILE B:561 , GLN B:584 , PHE B:608 , ALA B:612 , HIS B:613 , HIS B:618 , LYS B:632 , ASP B:634 , CYS B:635 , CYS B:638 , HIS B:639 , ILE B:650 , LEU B:652 , ARG B:654 , ARG B:658 , ALA B:680 , HIS B:733 , HEC B:910 , HOH B:1014 , HOH B:1054 , HOH B:1147BINDING SITE FOR RESIDUE HEC B 909
26CC8SOFTWAREHIS B:613 , LYS B:632 , LEU B:652 , ALA B:680 , CYS B:681 , CYS B:684 , HIS B:685 , HIS B:724 , LEU B:729 , HIS B:733 , HEC B:909 , HEC B:911BINDING SITE FOR RESIDUE HEC B 910
27CC9SOFTWAREALA B:678 , HIS B:696 , ILE B:697 , ASN B:700 , SER B:719 , CYS B:720 , CYS B:723 , HIS B:724 , HEC B:910 , HOH B:1356 , ALA C:329BINDING SITE FOR RESIDUE HEC B 911
28DC1SOFTWAREASP B:260 , GLU B:262 , ILE B:299 , HEC B:903 , HOH B:1419 , HOH B:1420BINDING SITE FOR RESIDUE CA B 912
29DC2SOFTWAREHOH B:1343 , HOH B:1344 , HOH B:1345 , HOH B:1398BINDING SITE FOR RESIDUE CA B 913
30DC3SOFTWAREILE B:404 , TRP B:545 , GLY B:547 , THR B:548BINDING SITE FOR RESIDUE DMS B 914
31DC4SOFTWAREHIS B:312 , GLU B:616 , GLY B:617 , GLY B:624 , HEC B:907BINDING SITE FOR RESIDUE DMS B 915
32DC5SOFTWAREGLN B:233 , ASP B:634 , ALA B:636 , ASN B:735 , HOH B:1209BINDING SITE FOR RESIDUE DMS B 916
33DC6SOFTWARECYS C:228 , CYS C:231 , HIS C:232 , LEU C:237 , HIS C:277 , TYR C:308 , TYR C:313 , GLN C:315 , ALA C:323 , LEU C:620 , GLY C:624 , VAL C:625 , GLN C:626 , SER C:627 , THR C:629 , HOH C:922 , HOH C:933 , HOH C:1213BINDING SITE FOR RESIDUE HEC C 801
34DC7SOFTWAREGLN C:142 , VAL C:145 , LEU C:239 , HIS C:240 , ARG C:244 , ASN C:249 , CYS C:250 , CYS C:253 , HIS C:254 , ASP C:260 , ILE C:267 , MET C:272 , ILE C:299 , GLY C:300 , ILE C:306 , TYR C:308 , CA C:811 , HOH C:1008 , HOH C:1118 , HOH C:1278BINDING SITE FOR RESIDUE HEC C 802
35DC8SOFTWAREARG C:220 , PHE C:269 , THR C:270 , ILE C:273 , HIS C:274 , HIS C:277 , TYR C:313 , CYS C:321 , CYS C:324 , HIS C:325 , LEU C:337 , PHE C:338 , HIS C:384 , HEC C:804 , HOH C:915 , HOH C:940 , HOH C:960 , HOH C:963 , HOH C:972 , HOH C:1169BINDING SITE FOR RESIDUE HEC C 803
36DC9SOFTWAREHIS C:274 , LYS C:278 , ALA C:346 , CYS C:347 , CYS C:350 , HIS C:351 , HIS C:368 , ALA C:380 , ARG C:383 , HIS C:384 , VAL C:387 , HEC C:803 , HEC C:805 , HOH C:1003 , HOH C:1117 , HOH C:1264BINDING SITE FOR RESIDUE HEC C 804
37EC1SOFTWAREHIS C:351 , GLU C:353 , PRO C:355 , HIS C:359 , SER C:361 , THR C:362 , ASP C:363 , CYS C:364 , CYS C:367 , HIS C:368 , TYR C:374 , THR C:377 , ARG C:383 , TYR C:517 , HEC C:804 , DMS C:813 , HOH C:983 , HOH C:1042 , TYR D:517BINDING SITE FOR RESIDUE HEC C 805
38EC2SOFTWARECYS C:231 , HIS C:312 , PRO C:314 , LYS C:316 , LYS C:565 , CYS C:566 , CYS C:569 , HIS C:570 , PHE C:608 , SER C:615 , GLY C:617 , HIS C:618 , VAL C:630 , THR C:637 , CYS C:638 , HEC C:807 , DMS C:815BINDING SITE FOR RESIDUE HEC C 806
39EC3SOFTWARETYR C:442 , TYR C:460 , VAL C:575 , HIS C:576 , TYR C:577 , CYS C:583 , CYS C:586 , HIS C:587 , LYS C:591 , LYS C:594 , THR C:606 , LYS C:611 , HEC C:806BINDING SITE FOR RESIDUE HEC C 807
40EC4SOFTWAREARG C:557 , ARG C:558 , ILE C:560 , ILE C:561 , PHE C:608 , ALA C:612 , HIS C:613 , HIS C:618 , LYS C:632 , THR C:633 , CYS C:635 , CYS C:638 , HIS C:639 , LEU C:652 , ARG C:654 , ARG C:658 , HOH C:1099 , HOH C:1104BINDING SITE FOR RESIDUE HEC C 808
41EC5SOFTWAREHIS C:613 , LYS C:632 , LEU C:652 , ALA C:680 , CYS C:681 , CYS C:684 , HIS C:685 , HIS C:724 , HIS C:733 , HEC C:810BINDING SITE FOR RESIDUE HEC C 809
42EC6SOFTWAREALA C:693 , HIS C:696 , ILE C:697 , ASN C:700 , GLY C:702 , SER C:719 , CYS C:720 , THR C:722 , CYS C:723 , HIS C:724 , HEC C:809BINDING SITE FOR RESIDUE HEC C 810
43EC7SOFTWAREASP C:260 , GLU C:262 , ILE C:299 , HEC C:802 , HOH C:1278 , HOH C:1279BINDING SITE FOR RESIDUE CA C 811
44EC8SOFTWAREHOH C:1213 , HOH C:1214 , HOH C:1215 , HOH C:1216BINDING SITE FOR RESIDUE CA C 812
45EC9SOFTWAREHIS C:358 , HIS C:359 , HEC C:805 , TYR D:374 , GLY D:375 , TYR D:517BINDING SITE FOR RESIDUE DMS C 813
46FC1SOFTWAREILE C:404 , GLY C:405 , TRP C:545 , GLY C:547 , ASP C:549BINDING SITE FOR RESIDUE DMS C 814
47FC2SOFTWAREHIS C:312 , GLU C:616 , GLY C:617 , LEU C:620 , GLY C:624 , HEC C:806 , HOH C:962BINDING SITE FOR RESIDUE DMS C 815
48FC3SOFTWAREGLN C:233 , ASP C:634BINDING SITE FOR RESIDUE DMS C 816
49FC4SOFTWAREALA D:227 , CYS D:228 , CYS D:231 , HIS D:232 , LEU D:237 , HIS D:277 , TYR D:308 , TYR D:313 , GLN D:315 , ALA D:323 , CYS D:324 , LEU D:620 , GLY D:624 , VAL D:625 , GLN D:626 , SER D:627 , THR D:629 , HEC D:806 , HOH D:932 , HOH D:1173 , HOH D:1351BINDING SITE FOR RESIDUE HEC D 801
50FC5SOFTWAREGLN D:142 , LEU D:239 , HIS D:240 , ARG D:244 , ASN D:249 , CYS D:250 , CYS D:253 , HIS D:254 , ASP D:260 , ILE D:267 , MET D:272 , ILE D:299 , GLY D:300 , TYR D:308 , CA D:811 , HOH D:1238 , HOH D:1265BINDING SITE FOR RESIDUE HEC D 802
51FC6SOFTWAREARG D:220 , VAL D:222 , PHE D:269 , THR D:270 , ILE D:273 , HIS D:274 , HIS D:277 , TYR D:313 , CYS D:321 , CYS D:324 , HIS D:325 , LEU D:337 , PHE D:338 , HIS D:384 , HEC D:804 , HOH D:910 , HOH D:921 , HOH D:981 , HOH D:986 , HOH D:1142 , HOH D:1249 , HOH D:1444BINDING SITE FOR RESIDUE HEC D 803
52FC7SOFTWAREHIS D:274 , LYS D:278 , ALA D:346 , CYS D:347 , CYS D:350 , HIS D:351 , HIS D:368 , ALA D:380 , ARG D:383 , HIS D:384 , VAL D:387 , HEC D:803 , HEC D:805 , HOH D:974 , HOH D:994BINDING SITE FOR RESIDUE HEC D 804
53FC8SOFTWARECYS D:347 , HIS D:351 , GLU D:353 , PRO D:355 , HIS D:359 , SER D:361 , THR D:362 , ASP D:363 , CYS D:364 , CYS D:367 , HIS D:368 , THR D:377 , ARG D:383 , TYR D:517 , HEC D:804 , DMS D:813 , HOH D:1067 , HOH D:1076BINDING SITE FOR RESIDUE HEC D 805
54FC9SOFTWAREHIS D:312 , PRO D:314 , LYS D:316 , LYS D:565 , CYS D:566 , CYS D:569 , HIS D:570 , ILE D:574 , VAL D:575 , PHE D:608 , SER D:615 , GLY D:617 , HIS D:618 , VAL D:630 , THR D:637 , HEC D:801 , HEC D:807 , DMS D:815 , HOH D:1153BINDING SITE FOR RESIDUE HEC D 806
55GC1SOFTWARETYR D:442 , TYR D:460 , VAL D:575 , HIS D:576 , TYR D:577 , CYS D:583 , CYS D:586 , HIS D:587 , LYS D:591 , THR D:606 , LYS D:611 , HEC D:806 , HOH D:1048 , HOH D:1225BINDING SITE FOR RESIDUE HEC D 807
56GC2SOFTWAREARG D:557 , ARG D:558 , ILE D:560 , ILE D:561 , GLN D:584 , PHE D:608 , ALA D:612 , HIS D:613 , HIS D:618 , LYS D:632 , THR D:633 , CYS D:635 , CYS D:638 , HIS D:639 , LEU D:652 , ARG D:654 , ARG D:658 , HIS D:733 , HEC D:809 , HOH D:911 , HOH D:924 , HOH D:1358BINDING SITE FOR RESIDUE HEC D 808
57GC3SOFTWAREHIS D:613 , LYS D:632 , ALA D:680 , CYS D:681 , CYS D:684 , HIS D:685 , HIS D:724 , LEU D:729 , HIS D:733 , HEC D:808 , HEC D:810 , HOH D:1185 , HOH D:1380BINDING SITE FOR RESIDUE HEC D 809
58GC4SOFTWAREALA A:329 , HIS D:696 , ASN D:700 , SER D:719 , CYS D:720 , CYS D:723 , HIS D:724 , HEC D:809 , HOH D:941 , HOH D:1105BINDING SITE FOR RESIDUE HEC D 810
59GC5SOFTWAREASP D:260 , GLU D:262 , ILE D:299 , HEC D:802 , HOH D:1265BINDING SITE FOR RESIDUE CA D 811
60GC6SOFTWAREHOH D:1230 , HOH D:1351 , HOH D:1352 , HOH D:1451BINDING SITE FOR RESIDUE CA D 812
61GC7SOFTWARETYR C:374 , TYR C:517 , HIS D:358 , HIS D:359 , TYR D:374 , HEC D:805BINDING SITE FOR RESIDUE DMS D 813
62GC8SOFTWAREILE D:404 , TRP D:545 , GLY D:547 , THR D:548 , HOH D:963BINDING SITE FOR RESIDUE DMS D 814
63GC9SOFTWAREHIS D:312 , GLU D:616 , GLY D:617 , HEC D:806BINDING SITE FOR RESIDUE DMS D 815
64HC1SOFTWAREASP D:634 , ASN D:735BINDING SITE FOR RESIDUE DMS D 816

(-) SS Bonds  (8, 8)

Asymmetric Unit
No.Residues
1A:151 -A:154
2A:511 -A:527
3B:151 -B:154
4B:511 -B:527
5C:151 -C:154
6C:511 -C:527
7D:151 -D:154
8D:511 -D:527

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Glu A:176 -Pro A:177
2Lys A:316 -Pro A:317
3Glu B:176 -Pro B:177
4Lys B:316 -Pro B:317
5Glu C:176 -Pro C:177
6Lys C:316 -Pro C:317
7Glu D:176 -Pro D:177
8Lys D:316 -Pro D:317

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LMH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LMH)

(-) Exons   (0, 0)

(no "Exon" information available for 4LMH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:693
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee.......eeeeeeeeee..eeeeeeeee......ee......eeeeeeeeeeeeeee....eeeeeeeeee..eeee................eeee..ee.hhh...eee....eeeee....................eeeeeeeee....eeeeeeee................hhhhhh...hhhhhh.......hhhhhhhhh.............hhhhhhhhhhhh...eee.....eee...eee.hhh.eee.hhh........hhhhh.........hhhhhhh...hhhhhhhhh..........hhhhhh..........hhhhhhhhhhhhhhhhh..eeeeeeeeee..eeeeeeeee.......hhhhh.........eeeeee..................eee......eeee....eeeee...............eeeeeee.eeee...................eeee.....eeee.................hhhhhhhhhh..........hhhhh.......ee.......ee..hhhhhhhhhhhhh..............hhhhh........hhhhh........eeeee.....eeeeehhhhhhhhhhhh...hhhhhhhhhhh.......hhhhhhhhh..hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lmh A  43 VGVNINSTSTLKAKFTNATVDAGKVTVNFTLENANGVAVLGLTKDHDLRFGIAQLTPVKEKVGETEADRGYQWQAYINAKKEPGTVPSGVDNLNPSTQFQANVESANKCDTCLVDHGDGSYSYTYQVNVANVTEPVKVTYSADATQRATMELELPQLAANAHFDWQPSTGKTEGIQTRNVVSIQACYTCHQPESLALHGGRRIDIENCASCHTATSGDPESGNSIEFTYMIHAIHKGGERHTFDATGAQVPAPYKIIGYGGKVIDYGKVHYPQKPAADCAACHVEGAGAPANADLFKADLSNQACIGCHTEKPSAHHSSTDCMACHNATKPYGGTGSAAKRHGDVMKAYNDSLGYKAKFSNIGIKNNALTFDVQILDNKDQPIGKEFISDPSAYTKSSIYFSWGIDKDYPAYTAGSRYSDRGFALSNSKVSTYNEATKTFTIDSTNSNLKLPADLTGMNVELYAGVATCFNKGGYGVEDVVATPCSTDTRYAYIQDQPFRFKWNGTDTNSAAEKRRAIIDTAKCSGCHNKEIVHYDNGVNCQACHTPDKGLKTDNTYPGTKVPTSFAWKAHESEGHYLKYAGVQSGTVLKTDCATCHTADKSNVVTGIALGRSPERAWLYGDIKNNGAVIWVSSDAGACLSCHQKYLSDAAKSHIETNGGILNGTSAADVQTRASESCATCHTPSQLMEAHGN 735
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732   


Chain B from PDB  Type:PROTEIN  Length:694
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee.hhh...eeeeeeeeee..eeeeeeeee......ee......eeeeeeeeeeeeeeee..eeeeeeeeeee..eeee................eeee..ee.hhh...eee....eeeee......ee.....ee.....eeeeeeeee....eeeeeeee................hhhhhh...hhhhhhhhhhh..hhhhhhh...............hhhhhhhhhhhh...eee.....eee...eee.hhh.eee.hhh........hhhhh.........hhhhhhh..hhhhhhhhhh..........hhhhhh..........hhhhhhhhhhhhhhhhh..eeeeeeeeee..eeeeeeeee.......hhhhh.........eeeee...................eee......eeee....eeeee...............eeeeeee.eeee...................eeee.....eeee.................hhhhhhhhhh..........hhhhh.......ee.......ee..hhhhhhhhhhhhh..............hhhhh........hhhhh.......eeeeee.....eeeeeehhhhhhhhhhh...hhhhhhhhhhh.......hhhhhhhhh..hhhhh.hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lmh B  43 VGVNINSTSTLKAKFTNATVDAGKVTVNFTLENANGVAVLGLTKDHDLRFGIAQLTPVKEKVGETEADRGYQWQAYINAKKEPGTVPSGVDNLNPSTQFQANVESANKCDTCLVDHGDGSYSYTYQVNVANVTEPVKVTYSADATQRATMELELPQLAANAHFDWQPSTGKTEGIQTRNVVSIQACYTCHQPESLALHGGRRIDIENCASCHTATSGDPESGNSIEFTYMIHAIHKGGERHTFDATGAQVPAPYKIIGYGGKVIDYGKVHYPQKPAADCAACHVEGAGAPANADLFKADLSNQACIGCHTEKPSAHHSSTDCMACHNATKPYGGTGSAAKRHGDVMKAYNDSLGYKAKFSNIGIKNNALTFDVQILDNKDQPIGKEFISDPSAYTKSSIYFSWGIDKDYPAYTAGSRYSDRGFALSNSKVSTYNEATKTFTIDSTNSNLKLPADLTGMNVELYAGVATCFNKGGYGVEDVVATPCSTDTRYAYIQDQPFRFKWNGTDTNSAAEKRRAIIDTAKCSGCHNKEIVHYDNGVNCQACHTPDKGLKTDNTYPGTKVPTSFAWKAHESEGHYLKYAGVQSGTVLKTDCATCHTADKSNVVTGIALGRSPERAWLYGDIKNNGAVIWVSSDAGACLSCHQKYLSDAAKSHIETNGGILNGTSAADVQTRASESCATCHTPSQLMEAHGNK 736
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732    


Chain C from PDB  Type:PROTEIN  Length:692
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.......eeeeeeeeee..eeeeeeeee......ee......eeeeeeeeeeeeeeee..eeeeeeeeeee..eeee................eeee..ee.hhh...eee....eeeee.....................eeeeeeee....eeeeeeee................hhhhhh...hhhhhh.......hhhhhhhhh.............hhhhhhhhhhhh...eee.....eee...eee.hhh.eee.hhh........hhhhh.........hhhhhhh...hhhhhhhhh..........hhhhhh..........hhhhhhhhhhhhhhhhh..eeeeeeeeee..eeeeeeeee.......hhhhh.........eeeeee..................eee......eeee....eeeee...............eeeeeee.eeee...................eeee.....eeee.................hhhhhhhhhh..........hhhhh.......ee.......ee..hhhhhhhhhhhhh..............hhhhh........hhhhh.......eeeeee.....eeeeeehhhhhhhhhhh...hhhhhhhhhh........hhhhhhhhh..hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lmh C  44 GVNINSTSTLKAKFTNATVDAGKVTVNFTLENANGVAVLGLTKDHDLRFGIAQLTPVKEKVGETEADRGYQWQAYINAKKEPGTVPSGVDNLNPSTQFQANVESANKCDTCLVDHGDGSYSYTYQVNVANVTEPVKVTYSADATQRATMELELPQLAANAHFDWQPSTGKTEGIQTRNVVSIQACYTCHQPESLALHGGRRIDIENCASCHTATSGDPESGNSIEFTYMIHAIHKGGERHTFDATGAQVPAPYKIIGYGGKVIDYGKVHYPQKPAADCAACHVEGAGAPANADLFKADLSNQACIGCHTEKPSAHHSSTDCMACHNATKPYGGTGSAAKRHGDVMKAYNDSLGYKAKFSNIGIKNNALTFDVQILDNKDQPIGKEFISDPSAYTKSSIYFSWGIDKDYPAYTAGSRYSDRGFALSNSKVSTYNEATKTFTIDSTNSNLKLPADLTGMNVELYAGVATCFNKGGYGVEDVVATPCSTDTRYAYIQDQPFRFKWNGTDTNSAAEKRRAIIDTAKCSGCHNKEIVHYDNGVNCQACHTPDKGLKTDNTYPGTKVPTSFAWKAHESEGHYLKYAGVQSGTVLKTDCATCHTADKSNVVTGIALGRSPERAWLYGDIKNNGAVIWVSSDAGACLSCHQKYLSDAAKSHIETNGGILNGTSAADVQTRASESCATCHTPSQLMEAHGN 735
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733  


Chain D from PDB  Type:PROTEIN  Length:695
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee.hhh...eeeeeeeeee..eeeeeeeee......ee......eeeeeeeeeeeeeeee..eeeeeeeeeee..eeee................eeee..ee.hhh...eee....eeeee....................eeeeeeeee....eeeeeeee................hhhhhh...hhhhhhhhhhh..hhhhhhhhh.............hhhhhhhhhhhh...eee.....eee...eee.hhh.eee.hhh........hhhhh.........hhhhhhh...hhhhhhhhh..........hhhhhh..........hhhhhhhhhhhhhhhhh..eeeeeeeee....eeeeeeee.......hhhhh.........eeeee...................eee......eeee....eeeee...............eeeeeee.eeee...................eeee.....eeee.................hhhhhhhhhh..........hhhhh.......ee.......ee..hhhhhhhhhhhhh..............hhhhh........hhhhh........eeee.......eeeehhhhhhhhhhhh...hhhhhhhhhhh.......hhhhhhhhh........hhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lmh D  43 VGVNINSTSTLKAKFTNATVDAGKVTVNFTLENANGVAVLGLTKDHDLRFGIAQLTPVKEKVGETEADRGYQWQAYINAKKEPGTVPSGVDNLNPSTQFQANVESANKCDTCLVDHGDGSYSYTYQVNVANVTEPVKVTYSADATQRATMELELPQLAANAHFDWQPSTGKTEGIQTRNVVSIQACYTCHQPESLALHGGRRIDIENCASCHTATSGDPESGNSIEFTYMIHAIHKGGERHTFDATGAQVPAPYKIIGYGGKVIDYGKVHYPQKPAADCAACHVEGAGAPANADLFKADLSNQACIGCHTEKPSAHHSSTDCMACHNATKPYGGTGSAAKRHGDVMKAYNDSLGYKAKFSNIGIKNNALTFDVQILDNKDQPIGKEFISDPSAYTKSSIYFSWGIDKDYPAYTAGSRYSDRGFALSNSKVSTYNEATKTFTIDSTNSNLKLPADLTGMNVELYAGVATCFNKGGYGVEDVVATPCSTDTRYAYIQDQPFRFKWNGTDTNSAAEKRRAIIDTAKCSGCHNKEIVHYDNGVNCQACHTPDKGLKTDNTYPGTKVPTSFAWKAHESEGHYLKYAGVQSGTVLKTDCATCHTADKSNVVTGIALGRSPERAWLYGDIKNNGAVIWVSSDAGACLSCHQKYLSDAAKSHIETNGGILNGTSAADVQTRASESCATCHTPSQLMEAHGNKG 737
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LMH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LMH)

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(no "Pfam Domain" information available for 4LMH)

(-) Gene Ontology  (2, 2)

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3pmq 3ucp 4lm8