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4LMH
Biol. Unit 4
Info
Asym.Unit (530 KB)
Biol.Unit 1 (134 KB)
Biol.Unit 2 (134 KB)
Biol.Unit 3 (133 KB)
Biol.Unit 4 (137 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE OUTER MEMBRANE DECAHEME CYTOCHROME OMCA
Authors
:
M. J. Edwards, N. Baiden, T. A. Clarke
Date
:
10 Jul 13 (Deposition) - 16 Apr 14 (Release) - 09 Sep 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Greek Key Beta Barrel, Electron Transport C-Type Cytochrome, Outer Membrane, Electron Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. J. Edwards, N. Baiden, T. A. Clarke, D. J. Richardson
Insights Into Electron Transfer At The Microbe-Mineral Interface: The X-Ray Crystal Structures Of Shewanella Oneidensis Mtrc And Omca
Febs Letters 2014
[
close entry info
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Hetero Components
(2, 14)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
2a: DIMETHYL SULFOXIDE (DMSa)
2b: DIMETHYL SULFOXIDE (DMSb)
2c: DIMETHYL SULFOXIDE (DMSc)
2d: DIMETHYL SULFOXIDE (DMSd)
2e: DIMETHYL SULFOXIDE (DMSe)
2f: DIMETHYL SULFOXIDE (DMSf)
2g: DIMETHYL SULFOXIDE (DMSg)
2h: DIMETHYL SULFOXIDE (DMSh)
2i: DIMETHYL SULFOXIDE (DMSi)
2j: DIMETHYL SULFOXIDE (DMSj)
2k: DIMETHYL SULFOXIDE (DMSk)
2l: DIMETHYL SULFOXIDE (DMSl)
2m: DIMETHYL SULFOXIDE (DMSm)
2n: DIMETHYL SULFOXIDE (DMSn)
2o: DIMETHYL SULFOXIDE (DMSo)
2p: DIMETHYL SULFOXIDE (DMSp)
3a: HEME C (HECa)
3aa: HEME C (HECaa)
3ab: HEME C (HECab)
3ac: HEME C (HECac)
3ad: HEME C (HECad)
3ae: HEME C (HECae)
3af: HEME C (HECaf)
3ag: HEME C (HECag)
3ah: HEME C (HECah)
3ai: HEME C (HECai)
3aj: HEME C (HECaj)
3ak: HEME C (HECak)
3al: HEME C (HECal)
3am: HEME C (HECam)
3an: HEME C (HECan)
3b: HEME C (HECb)
3c: HEME C (HECc)
3d: HEME C (HECd)
3e: HEME C (HECe)
3f: HEME C (HECf)
3g: HEME C (HECg)
3h: HEME C (HECh)
3i: HEME C (HECi)
3j: HEME C (HECj)
3k: HEME C (HECk)
3l: HEME C (HECl)
3m: HEME C (HECm)
3n: HEME C (HECn)
3o: HEME C (HECo)
3p: HEME C (HECp)
3q: HEME C (HECq)
3r: HEME C (HECr)
3s: HEME C (HECs)
3t: HEME C (HECt)
3u: HEME C (HECu)
3v: HEME C (HECv)
3w: HEME C (HECw)
3x: HEME C (HECx)
3y: HEME C (HECy)
3z: HEME C (HECz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
DMS
4
Ligand/Ion
DIMETHYL SULFOXIDE
3
HEC
10
Ligand/Ion
HEME C
[
close Hetero Component info
]
Sites
(18, 18)
Info
All Sites
01: EC1 (SOFTWARE)
02: EC9 (SOFTWARE)
03: FC4 (SOFTWARE)
04: FC5 (SOFTWARE)
05: FC6 (SOFTWARE)
06: FC7 (SOFTWARE)
07: FC8 (SOFTWARE)
08: FC9 (SOFTWARE)
09: GC1 (SOFTWARE)
10: GC2 (SOFTWARE)
11: GC3 (SOFTWARE)
12: GC4 (SOFTWARE)
13: GC5 (SOFTWARE)
14: GC6 (SOFTWARE)
15: GC7 (SOFTWARE)
16: GC8 (SOFTWARE)
17: GC9 (SOFTWARE)
18: HC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
EC1
SOFTWARE
HIS C:351 , GLU C:353 , PRO C:355 , HIS C:359 , SER C:361 , THR C:362 , ASP C:363 , CYS C:364 , CYS C:367 , HIS C:368 , TYR C:374 , THR C:377 , ARG C:383 , TYR C:517 , HEC C:804 , DMS C:813 , HOH C:983 , HOH C:1042 , TYR D:517
BINDING SITE FOR RESIDUE HEC C 805
02
EC9
SOFTWARE
HIS C:358 , HIS C:359 , HEC C:805 , TYR D:374 , GLY D:375 , TYR D:517
BINDING SITE FOR RESIDUE DMS C 813
03
FC4
SOFTWARE
ALA D:227 , CYS D:228 , CYS D:231 , HIS D:232 , LEU D:237 , HIS D:277 , TYR D:308 , TYR D:313 , GLN D:315 , ALA D:323 , CYS D:324 , LEU D:620 , GLY D:624 , VAL D:625 , GLN D:626 , SER D:627 , THR D:629 , HEC D:806 , HOH D:932 , HOH D:1173 , HOH D:1351
BINDING SITE FOR RESIDUE HEC D 801
04
FC5
SOFTWARE
GLN D:142 , LEU D:239 , HIS D:240 , ARG D:244 , ASN D:249 , CYS D:250 , CYS D:253 , HIS D:254 , ASP D:260 , ILE D:267 , MET D:272 , ILE D:299 , GLY D:300 , TYR D:308 , CA D:811 , HOH D:1238 , HOH D:1265
BINDING SITE FOR RESIDUE HEC D 802
05
FC6
SOFTWARE
ARG D:220 , VAL D:222 , PHE D:269 , THR D:270 , ILE D:273 , HIS D:274 , HIS D:277 , TYR D:313 , CYS D:321 , CYS D:324 , HIS D:325 , LEU D:337 , PHE D:338 , HIS D:384 , HEC D:804 , HOH D:910 , HOH D:921 , HOH D:981 , HOH D:986 , HOH D:1142 , HOH D:1249 , HOH D:1444
BINDING SITE FOR RESIDUE HEC D 803
06
FC7
SOFTWARE
HIS D:274 , LYS D:278 , ALA D:346 , CYS D:347 , CYS D:350 , HIS D:351 , HIS D:368 , ALA D:380 , ARG D:383 , HIS D:384 , VAL D:387 , HEC D:803 , HEC D:805 , HOH D:974 , HOH D:994
BINDING SITE FOR RESIDUE HEC D 804
07
FC8
SOFTWARE
CYS D:347 , HIS D:351 , GLU D:353 , PRO D:355 , HIS D:359 , SER D:361 , THR D:362 , ASP D:363 , CYS D:364 , CYS D:367 , HIS D:368 , THR D:377 , ARG D:383 , TYR D:517 , HEC D:804 , DMS D:813 , HOH D:1067 , HOH D:1076
BINDING SITE FOR RESIDUE HEC D 805
08
FC9
SOFTWARE
HIS D:312 , PRO D:314 , LYS D:316 , LYS D:565 , CYS D:566 , CYS D:569 , HIS D:570 , ILE D:574 , VAL D:575 , PHE D:608 , SER D:615 , GLY D:617 , HIS D:618 , VAL D:630 , THR D:637 , HEC D:801 , HEC D:807 , DMS D:815 , HOH D:1153
BINDING SITE FOR RESIDUE HEC D 806
09
GC1
SOFTWARE
TYR D:442 , TYR D:460 , VAL D:575 , HIS D:576 , TYR D:577 , CYS D:583 , CYS D:586 , HIS D:587 , LYS D:591 , THR D:606 , LYS D:611 , HEC D:806 , HOH D:1048 , HOH D:1225
BINDING SITE FOR RESIDUE HEC D 807
10
GC2
SOFTWARE
ARG D:557 , ARG D:558 , ILE D:560 , ILE D:561 , GLN D:584 , PHE D:608 , ALA D:612 , HIS D:613 , HIS D:618 , LYS D:632 , THR D:633 , CYS D:635 , CYS D:638 , HIS D:639 , LEU D:652 , ARG D:654 , ARG D:658 , HIS D:733 , HEC D:809 , HOH D:911 , HOH D:924 , HOH D:1358
BINDING SITE FOR RESIDUE HEC D 808
11
GC3
SOFTWARE
HIS D:613 , LYS D:632 , ALA D:680 , CYS D:681 , CYS D:684 , HIS D:685 , HIS D:724 , LEU D:729 , HIS D:733 , HEC D:808 , HEC D:810 , HOH D:1185 , HOH D:1380
BINDING SITE FOR RESIDUE HEC D 809
12
GC4
SOFTWARE
ALA A:329 , HIS D:696 , ASN D:700 , SER D:719 , CYS D:720 , CYS D:723 , HIS D:724 , HEC D:809 , HOH D:941 , HOH D:1105
BINDING SITE FOR RESIDUE HEC D 810
13
GC5
SOFTWARE
ASP D:260 , GLU D:262 , ILE D:299 , HEC D:802 , HOH D:1265
BINDING SITE FOR RESIDUE CA D 811
14
GC6
SOFTWARE
HOH D:1230 , HOH D:1351 , HOH D:1352 , HOH D:1451
BINDING SITE FOR RESIDUE CA D 812
15
GC7
SOFTWARE
TYR C:374 , TYR C:517 , HIS D:358 , HIS D:359 , TYR D:374 , HEC D:805
BINDING SITE FOR RESIDUE DMS D 813
16
GC8
SOFTWARE
ILE D:404 , TRP D:545 , GLY D:547 , THR D:548 , HOH D:963
BINDING SITE FOR RESIDUE DMS D 814
17
GC9
SOFTWARE
HIS D:312 , GLU D:616 , GLY D:617 , HEC D:806
BINDING SITE FOR RESIDUE DMS D 815
18
HC1
SOFTWARE
ASP D:634 , ASN D:735
BINDING SITE FOR RESIDUE DMS D 816
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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Exons
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Note:
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain D
Asymmetric Unit 1
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