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4LMH
Biol. Unit 1
Info
Asym.Unit (530 KB)
Biol.Unit 1 (134 KB)
Biol.Unit 2 (134 KB)
Biol.Unit 3 (133 KB)
Biol.Unit 4 (137 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE OUTER MEMBRANE DECAHEME CYTOCHROME OMCA
Authors
:
M. J. Edwards, N. Baiden, T. A. Clarke
Date
:
10 Jul 13 (Deposition) - 16 Apr 14 (Release) - 09 Sep 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Greek Key Beta Barrel, Electron Transport C-Type Cytochrome, Outer Membrane, Electron Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. J. Edwards, N. Baiden, T. A. Clarke, D. J. Richardson
Insights Into Electron Transfer At The Microbe-Mineral Interface: The X-Ray Crystal Structures Of Shewanella Oneidensis Mtrc And Omca
Febs Letters 2014
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Hetero Components
(2, 14)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
2a: DIMETHYL SULFOXIDE (DMSa)
2b: DIMETHYL SULFOXIDE (DMSb)
2c: DIMETHYL SULFOXIDE (DMSc)
2d: DIMETHYL SULFOXIDE (DMSd)
2e: DIMETHYL SULFOXIDE (DMSe)
2f: DIMETHYL SULFOXIDE (DMSf)
2g: DIMETHYL SULFOXIDE (DMSg)
2h: DIMETHYL SULFOXIDE (DMSh)
2i: DIMETHYL SULFOXIDE (DMSi)
2j: DIMETHYL SULFOXIDE (DMSj)
2k: DIMETHYL SULFOXIDE (DMSk)
2l: DIMETHYL SULFOXIDE (DMSl)
2m: DIMETHYL SULFOXIDE (DMSm)
2n: DIMETHYL SULFOXIDE (DMSn)
2o: DIMETHYL SULFOXIDE (DMSo)
2p: DIMETHYL SULFOXIDE (DMSp)
3a: HEME C (HECa)
3aa: HEME C (HECaa)
3ab: HEME C (HECab)
3ac: HEME C (HECac)
3ad: HEME C (HECad)
3ae: HEME C (HECae)
3af: HEME C (HECaf)
3ag: HEME C (HECag)
3ah: HEME C (HECah)
3ai: HEME C (HECai)
3aj: HEME C (HECaj)
3ak: HEME C (HECak)
3al: HEME C (HECal)
3am: HEME C (HECam)
3an: HEME C (HECan)
3b: HEME C (HECb)
3c: HEME C (HECc)
3d: HEME C (HECd)
3e: HEME C (HECe)
3f: HEME C (HECf)
3g: HEME C (HECg)
3h: HEME C (HECh)
3i: HEME C (HECi)
3j: HEME C (HECj)
3k: HEME C (HECk)
3l: HEME C (HECl)
3m: HEME C (HECm)
3n: HEME C (HECn)
3o: HEME C (HECo)
3p: HEME C (HECp)
3q: HEME C (HECq)
3r: HEME C (HECr)
3s: HEME C (HECs)
3t: HEME C (HECt)
3u: HEME C (HECu)
3v: HEME C (HECv)
3w: HEME C (HECw)
3x: HEME C (HECx)
3y: HEME C (HECy)
3z: HEME C (HECz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
DMS
4
Ligand/Ion
DIMETHYL SULFOXIDE
3
HEC
10
Ligand/Ion
HEME C
[
close Hetero Component info
]
Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: CC4 (SOFTWARE)
19: GC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:227 , CYS A:228 , CYS A:231 , HIS A:232 , LEU A:237 , HIS A:277 , TYR A:308 , TYR A:313 , GLN A:315 , GLY A:624 , VAL A:625 , GLN A:626 , SER A:627 , THR A:629 , HOH A:976 , HOH A:1085
BINDING SITE FOR RESIDUE HEC A 801
02
AC2
SOFTWARE
GLN A:142 , VAL A:145 , LEU A:239 , HIS A:240 , ARG A:244 , ASN A:249 , CYS A:250 , CYS A:253 , HIS A:254 , ASP A:260 , ILE A:267 , MET A:272 , ILE A:299 , GLY A:300 , TYR A:308 , CA A:811 , HOH A:1085 , HOH A:1140 , HOH A:1295
BINDING SITE FOR RESIDUE HEC A 802
03
AC3
SOFTWARE
ARG A:220 , THR A:270 , ILE A:273 , HIS A:274 , HIS A:277 , TYR A:313 , CYS A:321 , CYS A:324 , HIS A:325 , LEU A:337 , PHE A:338 , SER A:343 , HIS A:384 , HEC A:804 , HOH A:910 , HOH A:915 , HOH A:952 , HOH A:961 , HOH A:969 , HOH A:1029 , HOH A:1112
BINDING SITE FOR RESIDUE HEC A 803
04
AC4
SOFTWARE
HIS A:274 , LYS A:278 , ALA A:318 , ALA A:346 , CYS A:347 , CYS A:350 , HIS A:351 , HIS A:368 , ALA A:380 , ARG A:383 , HIS A:384 , VAL A:387 , HEC A:803 , HEC A:805 , HOH A:922 , HOH A:1077 , HOH A:1174 , HOH A:1270
BINDING SITE FOR RESIDUE HEC A 804
05
AC5
SOFTWARE
HIS A:351 , GLU A:353 , PRO A:355 , HIS A:359 , SER A:361 , THR A:362 , ASP A:363 , CYS A:364 , CYS A:367 , HIS A:368 , TYR A:374 , THR A:377 , ARG A:383 , TYR A:517 , HEC A:804 , HOH A:970 , HOH A:977 , HOH A:1007 , DMS B:901
BINDING SITE FOR RESIDUE HEC A 805
06
AC6
SOFTWARE
HIS A:312 , PRO A:314 , LYS A:316 , LYS A:565 , CYS A:566 , CYS A:569 , HIS A:570 , ILE A:574 , PHE A:608 , SER A:615 , GLY A:617 , HIS A:618 , VAL A:630 , THR A:637 , HEC A:807 , DMS A:814 , HOH A:1074
BINDING SITE FOR RESIDUE HEC A 806
07
AC7
SOFTWARE
TYR A:442 , TYR A:460 , VAL A:575 , HIS A:576 , TYR A:577 , ASP A:578 , CYS A:583 , CYS A:586 , HIS A:587 , LYS A:591 , THR A:606 , LYS A:611 , HEC A:806 , HOH A:1074 , HOH A:1169
BINDING SITE FOR RESIDUE HEC A 807
08
AC8
SOFTWARE
ARG A:557 , ARG A:558 , ILE A:560 , ILE A:561 , GLN A:584 , PHE A:608 , ALA A:609 , ALA A:612 , HIS A:613 , HIS A:618 , LYS A:632 , ASP A:634 , CYS A:635 , CYS A:638 , HIS A:639 , ILE A:650 , ARG A:654 , ARG A:658 , HIS A:733 , HOH A:1091 , HOH A:1275
BINDING SITE FOR RESIDUE HEC A 808
09
AC9
SOFTWARE
HIS A:613 , LYS A:632 , ALA A:680 , CYS A:681 , CYS A:684 , HIS A:685 , TYR A:688 , HIS A:724 , LEU A:729 , ALA A:732 , HIS A:733 , HEC A:810 , HOH A:1124
BINDING SITE FOR RESIDUE HEC A 809
10
BC1
SOFTWARE
HIS A:696 , ILE A:697 , ASN A:700 , SER A:719 , CYS A:720 , CYS A:723 , HIS A:724 , HEC A:809
BINDING SITE FOR RESIDUE HEC A 810
11
BC2
SOFTWARE
ASP A:260 , GLU A:262 , ILE A:299 , HEC A:802 , HOH A:1294 , HOH A:1295
BINDING SITE FOR RESIDUE CA A 811
12
BC3
SOFTWARE
HOH A:1232 , HOH A:1233 , HOH A:1234 , HOH A:1296 , HOH A:1297
BINDING SITE FOR RESIDUE CA A 812
13
BC4
SOFTWARE
ILE A:404 , TRP A:545 , GLY A:547 , THR A:548 , THR A:550 , HOH A:1253
BINDING SITE FOR RESIDUE DMS A 813
14
BC5
SOFTWARE
HIS A:312 , GLU A:616 , GLY A:617 , GLY A:624 , HEC A:806
BINDING SITE FOR RESIDUE DMS A 814
15
BC6
SOFTWARE
GLN A:233 , ASP A:634 , ASN A:735
BINDING SITE FOR RESIDUE DMS A 815
16
BC7
SOFTWARE
TYR A:374 , GLY A:375 , TYR A:517 , HOH A:1214 , HIS B:358 , HIS B:359 , HEC B:906
BINDING SITE FOR RESIDUE DMS A 816
17
BC8
SOFTWARE
HIS A:358 , HIS A:359 , HEC A:805 , GLY B:375 , TYR B:517 , HOH B:1151
BINDING SITE FOR RESIDUE DMS B 901
18
CC4
SOFTWARE
DMS A:816 , CYS B:347 , HIS B:351 , GLU B:353 , PRO B:355 , HIS B:359 , SER B:361 , THR B:362 , ASP B:363 , CYS B:364 , CYS B:367 , HIS B:368 , THR B:377 , ARG B:383 , HEC B:905 , HOH B:1068 , HOH B:1105 , HOH B:1137 , HOH B:1381
BINDING SITE FOR RESIDUE HEC B 906
19
GC4
SOFTWARE
ALA A:329 , HIS D:696 , ASN D:700 , SER D:719 , CYS D:720 , CYS D:723 , HIS D:724 , HEC D:809 , HOH D:941 , HOH D:1105
BINDING SITE FOR RESIDUE HEC D 810
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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