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(-) Description

Title :  CRYSTAL STRUCTURE OF 1NM-PP1 BOUND TO ANALOG-SENSITIVE SRC KINASE
 
Authors :  M. S. Lopez, A. C. Dar, K. M. Shokat
Date :  27 Jun 13  (Deposition) - 07 Aug 13  (Release) - 09 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.84
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Kinase Domain, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Zhang, M. S. Lopez, A. C. Dar, E. Ladow, S. Finkbeiner, C. H. Yun, M. J. Eck, K. M. Shokat
Structure-Guided Inhibitor Design Expands The Scope Of Analog-Sensitive Kinase Technology.
Acs Chem. Biol. V. 8 1931 2013
PubMed-ID: 23841803  |  Reference-DOI: 10.1021/CB400376P

(-) Compounds

Molecule 1 - PROTO-ONCOGENE TYROSINE-PROTEIN KINASE SRC
    Chains: A, B
    EC Number: 2.7.10.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: KINASE DOMAIN (UNP RESIDUES 257-533)
    Gene: SRC
    Mutation: YES
    Organism Common: BANTAM,CHICKENS
    Organism Scientific: GALLUS GALLUS
    Organism Taxid: 9031
    Synonym: PROTO-ONCOGENE C-SRC, PP60C-SRC, P60-SRC

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
10JN2Ligand/Ion1-TERT-BUTYL-3-(NAPHTHALEN-1-YLMETHYL)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
10JN1Ligand/Ion1-TERT-BUTYL-3-(NAPHTHALEN-1-YLMETHYL)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
10JN1Ligand/Ion1-TERT-BUTYL-3-(NAPHTHALEN-1-YLMETHYL)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:273 , ALA A:293 , LYS A:295 , MET A:314 , ILE A:336 , GLY A:338 , GLU A:339 , TYR A:340 , MET A:341BINDING SITE FOR RESIDUE 0JN A 601
2AC2SOFTWARELEU B:273 , VAL B:281 , ALA B:293 , LYS B:295 , VAL B:323 , LEU B:325 , ILE B:336 , GLY B:338 , GLU B:339 , TYR B:340 , MET B:341BINDING SITE FOR RESIDUE 0JN B 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LGH)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric Unit
No.Residues
1Glu A:332 -Pro A:333
2Lys B:298 -Pro B:299
3Gln B:312 -Val B:313
4Glu B:332 -Pro B:333
5Gly B:406 -Leu B:407

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LGH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LGH)

(-) Exons   (0, 0)

(no "Exon" information available for 4LGH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:243
                                                                                                                                                                                                                                                                                   
               SCOP domains d4lgha_ A: c-src tyrosine kinase                                                                                                                                                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhh.eeeeeeee....eeeeee...eeeee....hhhhhh.......eeeee.....eeeee.....hhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh...........eee.....eee........hhhhhhh...hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lgh A 257 KDAWEIPRESLRLEVKLGQGGEVWMGTWNGTRVAIKTLEAQVMKKLRHEKLVQLYAVVSEEPIYIVGEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFEYLQAFLEDYFTSTEPQYQPGENL 533
                                   266       276|      288|      311       321       331       341       351       361       371       381       391       401   ||  430       440       450       460       470       480       490       500       510       520       530   
                                             276|      288|    297|                                                                                            405|                                                                                                            
                                              279       290     310                                                                                             425                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                       
               SCOP domains d4lghb_ B: c-src tyrosine kinase                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeeeee.....eeeeee...eeeeeee..................eeeee.....eeee......hhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.hhh.eee.....hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lgh B 259 AWEIPRESLRLEVKLGQCFGEVWMGTWNGTTRVAIKTLKPEAQVMKKLRHEKLVQLYAVVSEEPIYIVGEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFEYLQAFLEDYFTSTEPQYQPGENL 533
                                   268      |279       289       299|      319       329       339       349       359       369       379       389       399       426       436       446       456       466       476       486       496       506       516       526       
                                          275|                   299|                                                                                              407|                                                                                                            
                                           277                    310                                                                                               425
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LGH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LGH)

(-) Gene Ontology  (99, 99)

Asymmetric Unit(hide GO term definitions)

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  2.7.10.2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SRC_CHICK | P00523: 1f1w 1f2f 1nlo 1nlp 1p13 1prl 1prm 1rlp 1rlq 1srl 1srm 2hwo 2hwp 2oiq 2ptk 2qi8 2qlq 2qq7 3d7t 3d7u 3dqw 3dqx 3el7 3el8 3en4 3en5 3en6 3en7 3f3t 3f3u 3f3v 3f3w 3f6x 3fj5 3g5d 3g6g 3g6h 3geq 3lok 3oez 3of0 3qlf 3qlg 3svv 3tz7 3tz8 3tz9 3u4w 3u51 3uqf 3uqg 4agw 4dgg 4fic 4hvu 4hvv 4hvw 4jz3 4jz4 4le9 4lgg 4mcv 4o2p 4oml 4omm 4omn 4omo 4omp 4omq 4qt7 4rtu 4rtv 4rtw 4rtx 4rty 4rtz 4u5j 4ybj 4ybk 5bmm 5d10 5d11 5d12 5ec7 5eca 5i11 5j5s 5k9i 5oav 5ob0 5ob1 5ob2

(-) Related Entries Specified in the PDB File

4lgg CRYSTAL STRUCTURE OF 3MB-PP1 BOUND TO ANALOG-SENSITIVE SRC KINASE