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(-) Description

Title :  CRYSTAL STRUCTURE OF MOUSE RYANODINE RECEPTOR ISOFORM 2 (RYR2) 1-547
 
Authors :  L. Kimlicka, C. C. Tung, F. Van Petegem
Date :  07 Jun 13  (Deposition) - 24 Jul 13  (Release) - 24 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Ca2+ Release, Ion Channel, Er/Sr Membrane, Metal Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Kimlicka, C. C. Tung, A. C. Carlsson, P. A. Lobo, F. Van Petegem
Crystal Structure Of A Ryanodine Receptor Domain
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - RYANODINE RECEPTOR 2
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: ROSETTA
    Expression System Taxid: 511693
    Fragment: N-TERMINAL DOMAINS (UNP RESIDUES 1-547)
    Gene: RYR2
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: RYR-2, RYR2, CARDIAC MUSCLE RYANODINE RECEPTOR, CARDIAC MUSCLE RYANODINE RECEPTOR-CALCIUM RELEASE CHANNEL, TYPE 2 RYANODINE RECEPTOR, CARDIAC CA2+ RELEASE CHANNEL

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
3PGE1Ligand/IonTRIETHYLENE GLYCOL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:276 , ARG A:420BINDING SITE FOR RESIDUE CL A 601
2AC2SOFTWAREGLY A:231 , ASP A:232 , VAL A:233 , ARG A:276 , ARG A:407 , SER A:408 , ARG A:417 , HOH A:718 , HOH A:763BINDING SITE FOR RESIDUE PGE A 602
3AC3SOFTWAREPHE A:42 , ARG A:414 , ASP A:458 , TYR A:462BINDING SITE FOR RESIDUE PEG A 603

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4L4H)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4L4H)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4L4H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4L4H)

(-) Exons   (0, 0)

(no "Exon" information available for 4L4H)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:466
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeeeeee..eeeeeeee.........eeee.........hhhhh.eeeeeee..........eeeeee.....eeee.......eeeeee........eeeeee...............eeeeee.....eeeeee....eeeeee.....eeeeeeee.hhh.........eeeeee....eeee........hhhhh.eeee.hhhhhhhh.eeeee..............eeeeee.....eeee...eeeehhhhhhhhhhheeee................eeeeee.....eeee.....eeeeee........eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4l4h A  11 IQFLRTDDEVVLQCTATIHKEQQKLCLAAEGFGNRLCFLESTSNSKNVPPDLSICTFVLEQSLSVHRTLLYGHAILLRHSYSGMYLCCLSTSKLAFDVGLQEDTTGEACWWTIHPASKQRSEGEKVRVGDDLILVSVSSERYLHLSYGNSSWHVDAAFQQTLWSVAPISSGSEAAQGYLIGGDVLRLLHGHMDECLTVPSGEHGEEQRRTVHYEGGAVSVHARSLWRLETLRVAWSGSHIRWGQPFRLRHVTTGKYLSLMKNLLLMDKEKADVKSTAFAFRSSKEGMGTSEIKYGDSICYIQHVDTGLWLTYQAVDQRKAIMHHEGHMDDGLNLSRSQHEESRTARVIRSTVFLFNRFIRGLDALSKIDLPIESVSLSLQDLIGYFHPPDEHLEHEDKQNRLRALKNRQNLFQEEGMINLVLECIDRLHVYSSAAHFADVAGREAGESWKSILNSLYELLAALIRG 543
                                    20        30        40        50        60        70    || 114       124       134 ||    149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309|      321       331    || 352       362       372     ||391       401       411       421       431      |447       457       467       477       487       497       507       517       527       537      
                                                                                           75|                       136|                                                                                                                                                                    309|                     336|                           378|                                               438|                                                                                                  
                                                                                           110                        142                                                                                                                                                                     312                      348                            388                                                445
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4L4H)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4L4H)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4L4H)

(-) Gene Ontology  (69, 69)

Asymmetric/Biological Unit(hide GO term definitions)

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  4l4h
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  RYR2_MOUSE | E9Q401
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RYR2_MOUSE | E9Q401: 2mc2 3im5 3im6 3im7 3qr5 4etv 4kei 4kej 4kek 4l4i 4p9i 4p9l 5c33

(-) Related Entries Specified in the PDB File

4l4i