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(-) Description

Title :  X-RAY STRUCTURE OF THE COMPLEX HALOTAG2 WITH HALTS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET OR150.
 
Authors :  A. Kuzin, S. Lew, T. K. Neklesa, D. Noblin, J. Seetharaman, M. Maglaqui, E. Kohan, H. Wang, J. K. Everett, T. B. Acton, G. Kornhaber, G. T. Montel C. M. Crews, J. F. Hunt, L. Tong, Northeast Structural Genomics Con (Nesg)
Date :  22 Apr 13  (Deposition) - 05 Jun 13  (Release) - 05 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.22
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Structural Genomics, Psi-Biology, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Kuzin, S. Lew, T. K. Neklesa, D. Noblin, J. Seetharaman, M. Maglaqui R. Xiao, E. Kohan, H. Wang, J. K. Everett, T. B. Acton, G. Kornhaber, G. T. Montelione, C. M. Crews, J. F. Hunt, L. Tong
Northeast Structural Genomics Consortium Target Or150
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HALOALKANE DEHALOGENASE
    Chains: A, B
    EC Number: 3.8.1.5
    Engineered: YES
    Gene: DHAA
    Organism Scientific: RHODOCOCCUS SP.
    Organism Taxid: 1831

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 16)

Asymmetric Unit (4, 16)
No.NameCountTypeFull Name
11Q92Ligand/IonN-(2-ETHOXY-3,5-DIMETHYLBENZYL)-1H-TETRAZOL-5-AMINE
2MSE12Mod. Amino AcidSELENOMETHIONINE
3NH41Ligand/IonAMMONIUM ION
4PE41Ligand/Ion2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
Biological Unit 1 (2, 7)
No.NameCountTypeFull Name
11Q91Ligand/IonN-(2-ETHOXY-3,5-DIMETHYLBENZYL)-1H-TETRAZOL-5-AMINE
2MSE6Mod. Amino AcidSELENOMETHIONINE
3NH4-1Ligand/IonAMMONIUM ION
4PE4-1Ligand/Ion2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
Biological Unit 2 (4, 9)
No.NameCountTypeFull Name
11Q91Ligand/IonN-(2-ETHOXY-3,5-DIMETHYLBENZYL)-1H-TETRAZOL-5-AMINE
2MSE6Mod. Amino AcidSELENOMETHIONINE
3NH41Ligand/IonAMMONIUM ION
4PE41Ligand/Ion2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:52 , PRO A:53 , ASP A:117 , TRP A:118 , TRP A:152 , ALA A:156 , PHE A:160 , PHE A:179 , ALA A:183 , GLY A:187 , PRO A:217 , LEU A:220 , VAL A:256 , PHE A:283BINDING SITE FOR RESIDUE 1Q9 A 401
2AC2SOFTWAREGLY B:30 , ILE B:278 , PRO B:280 , ASN B:289BINDING SITE FOR RESIDUE NH4 B 401
3AC3SOFTWAREASN B:52 , PRO B:53 , ASP B:117 , TRP B:118 , TRP B:152 , PHE B:160 , PHE B:179 , ALA B:183 , PRO B:217 , VAL B:256 , LEU B:257 , PHE B:283BINDING SITE FOR RESIDUE 1Q9 B 402
4AC4SOFTWARELYS B:85 , ASP B:87BINDING SITE FOR RESIDUE PE4 B 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KAC)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Asn A:52 -Pro A:53
2Glu A:225 -Pro A:226
3Thr A:253 -Pro A:254
4Asn B:52 -Pro B:53
5Glu B:225 -Pro B:226
6Thr B:253 -Pro B:254

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KAC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KAC)

(-) Exons   (0, 0)

(no "Exon" information available for 4KAC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:292
                                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4kaca_ A: automated matches                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeee..eeeeeeee.......eeee.....hhhhhh.hhhhhh....eeee...............hhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhh...eeeeeee.......hhhhhhhhhhhhhhhhh..hhhhhhhh..hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhhhhhhhh..eeeeeeeee..hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kac A  14 EIGTGFPFDPHYVEVLGERmHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGmGKSDKPDLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACmEFIRPIPTWDEWPEFARETFQAFRTADVGRELIIDQNAFIEGALPmGVVRPLTEVEmDHYREPFLKPVDREPLWRFPNELPIAGEPANIVALVEAYmNWLHQSPVPKLLFWGTPGVLIPPAEAARLAESLPNCKTVDIGPGLFLLQEDNPDLIGSEIARWLPGLA 305
                                    23        33        43        53        63        73      | 83        93       103       113       123       133      |143       153       163       173       183  |    193   |   203       213       223       233   |   243       253       263       273       283       293       303  
                                              33-MSE                                         80-MSE                                                     140-MSE                                       186-MSE    197-MSE                                 237-MSE                                                                


Chain B from PDB  Type:PROTEIN  Length:292
                                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4kacb_ B: automated matches                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeee..eeeeeeee.......eeee.....hhhhhh.hhhhhh....eeee...............hhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhh...eeeeeee............hhhhhhhhhhhh..hhhhhhhh..hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhhhhhhhh..eeeeeeeee..hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kac B  14 EIGTGFPFDPHYVEVLGERmHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGmGKSDKPDLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACmEFIRPIPTWDEWPEFARETFQAFRTADVGRELIIDQNAFIEGALPmGVVRPLTEVEmDHYREPFLKPVDREPLWRFPNELPIAGEPANIVALVEAYmNWLHQSPVPKLLFWGTPGVLIPPAEAARLAESLPNCKTVDIGPGLFLLQEDNPDLIGSEIARWLPGLA 305
                                    23        33        43        53        63        73      | 83        93       103       113       123       133      |143       153       163       173       183  |    193   |   203       213       223       233   |   243       253       263       273       283       293       303  
                                              33-MSE                                         80-MSE                                                     140-MSE                                       186-MSE    197-MSE                                 237-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KAC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KAC)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)

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        DHAA_RHOSO | P0A3G3: 3fwh 3g9x 4hzg 4kaa 4kaf 4kaj 4wcv

(-) Related Entries Specified in the PDB File

1bn7 HOMOLOGY IS 97.95% RELATED ID: NESG-OR150 RELATED DB: TARGETTRACK