4HZG - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   STRUCTURE OF HALOALKANE DEHALOGENASE DHAA FROM RHODOCOCCUS RHODOCHROUS

Authors :   A. Stsiapanava, M. S. Weiss, J. R. Mesters, I. Kuta Smatanova

Date :   15 Nov 12 (Deposition) - 02 Oct 13 (Release) - 05 Mar 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.95

Chains :   Asym./Biol. Unit : A

Keywords :   Catalytic Pentad, Alpha/Beta Hydrolase Fold, Hydrolase, Halide Binding, Hydrolytic Dehalogenation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Lahoda, J. R. Mesters, A. Stsiapanava, R. Chaloupkova, M. Kuty, J. Damborsky, I. Kuta Smatanova
Crystallographic Analysis Of 1, 2, 3-Trichloropropane Biodegradation By The Haloalkane Dehalogenase Dhaa31.
Acta Crystallogr. , Sect. D V. 70 209 2014
PubMed-ID: 24531456 | Reference-DOI: 10.1107/S1399004713026254

Molecule 1 - HALOALKANE DEHALOGENASE
	Chains	:	A
	EC Number	:	3.8.1.5
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PAQN
	Expression System Strain	:	BL21
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	DHAA
	Organism Scientific	:	RHODOCOCCUS SP.
	Organism Taxid	:	1831
	Strain	:	NCIB 13064

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 1)

No.	Name	Count	Type	Full Name
1	CL	1	Ligand/Ion	CHLORIDE ION

Asymmetric Unit (1, 1)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASN A:41 , TRP A:107 , PHE A:205 , PRO A:206	BINDING SITE FOR RESIDUE CL A 301

(no "SS Bond" information available for 4HZG)

Asymmetric/Biological Unit

No.	Residues
1	Asn A:41	-	Pro A:42
2	Glu A:214	-	Pro A:215
3	Thr A:242	-	Pro A:243

(no "SAP(SNP)/Variant" information available for 4HZG)

(no "PROSITE Motif" information available for 4HZG)

(no "Exon" information available for 4HZG)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:294
                                                                                                                                                                                                                                                                                                                                      
               SCOP domains d4hzga_ A: automated matches                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........eeeee..eeeeeeee.......eeee.....hhhhhh.hhhhhh....eeee...............hhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhh...eeeeeee.......hhhhhhhhhhhhhhhhh..hhhhhhhh..hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhhhhhhhh..eeeeeeeee..hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4hzg A   3 EIGTGFPFDPHYVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPIPTWDEWPEFARETFQAFRTADVGRELIIDQNAFIEGALPKCVVRPLTEVEMDHYREPFLKPVDREPLWRFPNELPIAGEPANIVALVEAYMNWLHQSPVPKLLFWGTPGVLIPPAEAARLAESLPNCKTVDIGPGLHYLQEDNPDLIGSEIARWLPALHHH 296
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: alpha/beta-Hydrolases (971)

Superfamily: alpha/beta-Hydrolases (971)

Family: Haloalkane dehalogenase (50)

Protein domain: automated matches (18)

Rhodococcus sp. [TaxId: 1831] (7)

d4hzga_

(no "CATH Domain" information available for 4HZG)

(no "Pfam Domain" information available for 4HZG)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Asn A:41 - Pro A:42	[ RasMol ]
		Glu A:214 - Pro A:215	[ RasMol ]
		Thr A:242 - Pro A:243	[ RasMol ]

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Access by PDB/NDB ID
	4hzg
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
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Access by UniProt ID/Accession number
	DHAA_RHOSO \| P0A3G3
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	3.8.1.5
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

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	(no 'MIM ID' available)
		Disease Information	:	OMIM

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		Age Related Information	:	GenAge

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		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
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Access by UniProt ID/Accession number
	DHAA_RHOSO \| P0A3G3
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	DHAA_RHOSO \| P0A3G3	:	3fwh 3g9x 4kaa 4kac 4kaf 4kaj 4wcv

3fbw	DHAA(C176Y) MUTANT
3fwh	DHAA(I135F/C176Y) MUTANT
3g9x	DHAA(I135F) MUTANT
3rk4	DHAA(I135F/C176Y/V245F/L246I/Y273F) MUTANT
3sk0	DHAA(W138F/139HHTEVAEEQDH149 INSERTION/P150A/F152A/G179R/ A180V/K183G/C184G/V253A) MUTANT
4fwb	DHAA(I135F/C176Y/V245F/L246I/Y273F) MUTANT IN COMPLEX WITH 1,2,3-TRICHLOROPROPANE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

Sites (1, 1)

SS Bonds (0, 0)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (4, 4)

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