4KAF - JenaLib

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Title :   CRYSTAL STRUCTURE OF HALOALKANE DEHALOGENASE HALOTAG7 AT THE RESOLUTION 1.5A, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET OR151

Authors :   A. P. Kuzin, S. Lew, T. K. Neklesa, D. Noblin, J. Seetharaman, M. Maglaqu E. Kohan, H. Wang, J. K. Everett, T. B. Acton, G. Kornhaber, G. T. Montel C. Crews, L. Tong, Northeast Structural Genomics Consortium (Ne

Date :   22 Apr 13 (Deposition) - 05 Jun 13 (Release) - 05 Jun 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.50

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: A,B  (1x)

Keywords :   Structural Genomics, Psi-Biology, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. P. Kuzin, S. Lew, T. K. Neklesa, D. Noblin, J. Seetharaman, M. Maglaqui, R. Xiao, E. Kohan, H. Wang, J. K. Everett, T. B. Acton, G. Kornhaber, G. T. Montelione, C. Crews, L. Tong
Northeast Structural Genomics Consortium Target Or151
To Be Published
PubMed: search

Molecule 1 - HALOALKANE DEHALOGENASE
	Chains	:	A, B
	EC Number	:	3.8.1.5
	Engineered	:	YES
	Gene	:	DHAA
	Organism Scientific	:	RHODOCOCCUS SP.
	Organism Taxid	:	1831

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 26)

No.	Name	Count	Type	Full Name
1	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
2	MSE	15	Mod. Amino Acid	SELENOMETHIONINE
3	NA	6	Ligand/Ion	SODIUM ION
4	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
5	SCN	2	Ligand/Ion	THIOCYANATE ION

Biological Unit 1 (4, 20)

No.	Name	Count	Type	Full Name
1	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
2	MSE	15	Mod. Amino Acid	SELENOMETHIONINE
3	NA	-1	Ligand/Ion	SODIUM ION
4	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
5	SCN	2	Ligand/Ion	THIOCYANATE ION

Biological Unit 2 (4, 20)

No.	Name	Count	Type	Full Name
1	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
2	MSE	15	Mod. Amino Acid	SELENOMETHIONINE
3	NA	-1	Ligand/Ion	SODIUM ION
4	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
5	SCN	2	Ligand/Ion	THIOCYANATE ION

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASN A:51 , ASP A:116 , TRP A:117 , PRO A:216	BINDING SITE FOR RESIDUE SCN A 401
02	AC2	SOFTWARE	GLU A:224 , ALA A:226 , HOH A:715 , HOH B:581	BINDING SITE FOR RESIDUE NA A 402
03	AC3	SOFTWARE	ARG A:40 , PRO A:184 , VAL A:187 , ARG A:189 , HOH A:534	BINDING SITE FOR RESIDUE NA A 403
04	AC4	SOFTWARE	ASP A:21 , HIS A:23 , ASP A:36 , MSE A:185 , NA A:405 , HOH A:523	BINDING SITE FOR RESIDUE NA A 404
05	AC5	SOFTWARE	ASP A:21 , VAL A:37 , MSE A:185 , NA A:404	BINDING SITE FOR RESIDUE NA A 405
06	AC6	SOFTWARE	ASN B:51 , ASP B:116 , TRP B:117 , PHE B:215 , PRO B:216	BINDING SITE FOR RESIDUE SCN B 401
07	AC7	SOFTWARE	HOH A:592 , GLU B:224 , ALA B:226 , HOH B:736	BINDING SITE FOR RESIDUE NA B 402
08	AC8	SOFTWARE	GLU B:153 , HOH B:590 , HOH B:792	BINDING SITE FOR RESIDUE NA B 403
09	AC9	SOFTWARE	PHE B:18 , SER B:55 , ASP B:75 , LYS B:81 , EDO B:405 , HOH B:557 , HOH B:744	BINDING SITE FOR RESIDUE EDO B 404
10	BC1	SOFTWARE	PHE B:18 , PHE B:20 , PRO B:22 , HIS B:33 , LYS B:81 , EDO B:404 , HOH B:644	BINDING SITE FOR RESIDUE EDO B 405
11	BC2	SOFTWARE	HOH A:595 , PHE B:91 , ASP B:92 , ASN B:227 , ILE B:228 , LEU B:231 , HOH B:522 , HOH B:582 , HOH B:589 , HOH B:761	BINDING SITE FOR RESIDUE PEG B 406

(no "SS Bond" information available for 4KAF)

Asymmetric Unit

No.	Residues
1	Asn A:51	-	Pro A:52
2	Glu A:224	-	Pro A:225
3	Thr A:252	-	Pro A:253
4	Ser A:306	-	Gly A:307
5	Asn B:51	-	Pro B:52
6	Glu B:224	-	Pro B:225
7	Thr B:252	-	Pro B:253

(no "SAP(SNP)/Variant" information available for 4KAF)

(no "PROSITE Motif" information available for 4KAF)

(no "Exon" information available for 4KAF)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:296
                                                                                                                                                                                                                                                                                                                                        
               SCOP domains d4kafa_ A: automated matches                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee..eeeeeeee.......eeee.....hhhhhh.hhhhhh....eeee...............hhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhh...eeeeeee.......hhhhhhhhhhhhhhhhh..hhhhhhhh..hhhhhh.hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhhhhhhhh..eeeeeeeee..hhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kaf A  12 AEIGTGFPFDPHYVEVLGERmHYVDVGPRDGTPVLFLHGNPTSSYVWRNIIPHVAPTHRCIAPDLIGmGKSDKPDLGYFFDDHVRFmDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERIKGIAFmEFIRPIPTWDEWPEFARETFQAFRTTDVGRKLIIDQNVFIEGTLPmGVVRPLTEVEmDHYREPFLNPVDREPLWRFPNELPIAGEPANIVALVEEYmDWLHQSPVPKLLFWGTPGVLIPPAEAARLAKSLPNCKAVDIGPGLNLLQEDNPDLIGSEIARWLSTLEISG 307
                                    21        31|       41        51        61        71       |81        91      |101       111       121       131       141       151       161       171       181   |   191    |  201       211       221       231    |  241       251       261       271       281       291       301      
                                               32-MSE                                         79-MSE             98-MSE                                  139-MSE                                       185-MSE    196-MSE                                 236-MSE

Chain B from PDB  Type:PROTEIN  Length:299
                                                                                                                                                                                                                                                                                                                                           
               SCOP domains d4kafb_ B: automated matches                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeee..eeeeeeee.......eeee.....hhhhhh.hhhhhh....eeee...............hhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhh...eeeeeee.......hhhhhhhhhhhhhhhhh..hhhhhhhh..hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhhhhhhhh..eeeeeeeee..hhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kaf B  -1 SHmAEIGTGFPFDPHYVEVLGERmHYVDVGPRDGTPVLFLHGNPTSSYVWRNIIPHVAPTHRCIAPDLIGmGKSDKPDLGYFFDDHVRFmDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERIKGIAFmEFIRPIPTWDEWPEFARETFQAFRTTDVGRKLIIDQNVFIEGTLPmGVVRPLTEVEmDHYREPFLNPVDREPLWRFPNELPIAGEPANIVALVEEYmDWLHQSPVPKLLFWGTPGVLIPPAEAARLAKSLPNCKAVDIGPGLNLLQEDNPDLIGSEIARWLSTLEISG 307
                              ||    18        28   |    38        48        58        68        78|       88        98       108       118       128       138|      148       158       168       178      |188       198       208       218       228       238       248       258       268       278       288       298         
                              1-MSE               32-MSE                                         79-MSE             98-MSE                                  139-MSE                                       185-MSE    196-MSE                                 236-MSE                                                                   
                              12

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: alpha/beta-Hydrolases (971)

Superfamily: alpha/beta-Hydrolases (971)

Family: Haloalkane dehalogenase (50)

Protein domain: automated matches (18)

Rhodococcus sp. [TaxId: 1831] (7)

1a	d4kafa_	A:
1b	d4kafb_	B:

(no "CATH Domain" information available for 4KAF)

(no "Pfam Domain" information available for 4KAF)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Cis Peptide Bonds
		Asn A:51 - Pro A:52	[ RasMol ]
		Asn B:51 - Pro B:52	[ RasMol ]
		Glu A:224 - Pro A:225	[ RasMol ]
		Glu B:224 - Pro B:225	[ RasMol ]
		Ser A:306 - Gly A:307	[ RasMol ]
		Thr A:252 - Pro A:253	[ RasMol ]
		Thr B:252 - Pro B:253	[ RasMol ]

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	DHAA_RHOSO \| P0A3G3	:	3fwh 3g9x 4hzg 4kaa 4kac 4kaj 4wcv

4e46	HOMOLOGY IS 92.49% RELATED ID: NESG-OR151 RELATED DB: TARGETTRACK

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 26)

Sites (11, 11)

SS Bonds (0, 0)

Cis Peptide Bonds (7, 7)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

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