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(-) Description

Title :  CRYSTAL STRUCTURE OF THE DIMERIC FORM OF THE BB' DOMAINS OF HUMAN PROTEIN DISULFIDE ISOMERASE
 
Authors :  S. Bastos-Aristizabal, G. Kozlov, K. Gehring
Date :  24 Mar 13  (Deposition) - 19 Feb 14  (Release) - 07 May 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.28
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Thioredoxin-Like Fold, Disulfide Isomerase, Chaperone, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Bastos-Aristizabal, G. Kozlov, K. Gehring
Structural Insight Into The Dimerization Of Human Protein Disulfide Isomerase.
Protein Sci. V. 23 618 2014
PubMed-ID: 24549644  |  Reference-DOI: 10.1002/PRO.2444

(-) Compounds

Molecule 1 - PROTEIN DISULFIDE-ISOMERASE
    Chains: A, B
    EC Number: 5.3.4.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-6P-1
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: BB' DOMAIN
    Gene: P4HB, ERBA2L, PDI, PDIA1, PO4DB
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PDI, CELLULAR THYROID HORMONE-BINDING PROTEIN, PROLYL 4- HYDROXYLASE SUBUNIT BETA, P55

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4JU5)

(-) Sites  (0, 0)

(no "Site" information available for 4JU5)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JU5)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Cys A:312 -Pro A:313
2Cys B:312 -Pro B:313

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JU5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JU5)

(-) Exons   (0, 0)

(no "Exon" information available for 4JU5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:200
                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee..hhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhh....eeee.hhhhhhhh.....eeeeee.....eee.....hhhhhhhhhhhhh...eee....hhhhhhhh...eeeeee......hhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhh..hhhhh.eeeeeeee..hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ju5 A 136 AATTLPDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNSDVFSKYQLDKDGVVLFKKFDEGRNNFEGEVTKENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEETAERITEFCHRFL 347
                                   145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315      |337       347
                                                                                                                                                                                                                    322|            
                                                                                                                                                                                                                     335            


Chain B from PDB  Type:PROTEIN  Length:197
                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee..hhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhh.....eeee.hhhhhhhh.....eeeeee.....eee.....hhhhhhhhhhhhh...eee....hhhhhhh....eeeeee......hhhhhhhhhhhhhhh....eeeeee...hhhhhhhhhhh..hhhhh.eeeeeee..hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ju5 B 136 AATTLPDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNSDVFSKYQLDKDGVVLFKKFDEGRNNFEGEVTKENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEERITEFCHRFL 347
                                   145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315     ||340       
                                                                                                                                                                                                                   321|          
                                                                                                                                                                                                                    337
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4JU5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JU5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JU5)

(-) Gene Ontology  (28, 28)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Cys A:312 - Pro A:313   [ RasMol ]  
    Cys B:312 - Pro B:313   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PDIA1_HUMAN | P07237: 1bjx 1mek 1x5c 2bjx 2k18 3bj5 3uem 4ekz 4el1

(-) Related Entries Specified in the PDB File

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