4JQH - JenaLib

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Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF A NEW SGC ACTIVATOR (ANALOGUE OF BAY 58-2667) BOUND TO NOSTOC H-NOX DOMAIN

Authors :   V. Kumar, F. Van Den Akker

Date :   20 Mar 13 (Deposition) - 20 Nov 13 (Release) - 29 Apr 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym. Unit : A,B
Biol. Unit 1: A (1x),B (1x)
Biol. Unit 2: A  (3x)
Biol. Unit 3: B  (3x)
Biol. Unit 4: A,B  (3x)

Keywords :   Guanylyl Cyclase, Analogue Of Bay58-2667, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Von Wantoch Rekowski, V. Kumar, Z. Zhou, J. Moschner, A. Marazioti, M. Bantzi, G. A. Spyroulias, F. Van Den Akker, A. Giannis, A. Papapetropoulos
Insights Into Soluble Guanylyl Cyclase Activation Derived From Improved Heme-Mimetics.
J. Med. Chem. V. 56 8948 2013
PubMed-ID: 24090476 | Reference-DOI: 10.1021/JM400539D

Molecule 1 - ALR2278 PROTEIN
	Chains	:	A, B
	EC Number	:	4.6.1.2
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET22B
	Expression System Strain	:	ROSETTA 2(DE3)PLYSS
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	ALR2278
	Mutation	:	YES
	Organism Scientific	:	NOSTOC SP.
	Organism Taxid	:	103690
	Strain	:	PCC 7120

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A (1x)	B (1x)
Biological Unit 2 (3x)	:	A
Biological Unit 3 (3x)	:		B
Biological Unit 4 (3x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 4)

No.	Name	Count	Type	Full Name
1	1MF	2	Ligand/Ion	4-{[(4-CARBOXYBUTYL)(2-{2-[(4'-PHENOXYBIPHENYL-4-YL)METHOXY]PHENYL}ETHYL)AMINO]METHYL}BENZOIC ACID
2	MLA	2	Ligand/Ion	MALONIC ACID

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	1MF	1	Ligand/Ion	4-{[(4-CARBOXYBUTYL)(2-{2-[(4'-PHENOXYBIPHENYL-4-YL)METHOXY]PHENYL}ETHYL)AMINO]METHYL}BENZOIC ACID
2	MLA	1	Ligand/Ion	MALONIC ACID

Biological Unit 2 (2, 6)

No.	Name	Count	Type	Full Name
1	1MF	3	Ligand/Ion	4-{[(4-CARBOXYBUTYL)(2-{2-[(4'-PHENOXYBIPHENYL-4-YL)METHOXY]PHENYL}ETHYL)AMINO]METHYL}BENZOIC ACID
2	MLA	3	Ligand/Ion	MALONIC ACID

Biological Unit 3 (2, 6)

No.	Name	Count	Type	Full Name
1	1MF	3	Ligand/Ion	4-{[(4-CARBOXYBUTYL)(2-{2-[(4'-PHENOXYBIPHENYL-4-YL)METHOXY]PHENYL}ETHYL)AMINO]METHYL}BENZOIC ACID
2	MLA	3	Ligand/Ion	MALONIC ACID

Biological Unit 4 (2, 12)

No.	Name	Count	Type	Full Name
1	1MF	6	Ligand/Ion	4-{[(4-CARBOXYBUTYL)(2-{2-[(4'-PHENOXYBIPHENYL-4-YL)METHOXY]PHENYL}ETHYL)AMINO]METHYL}BENZOIC ACID
2	MLA	6	Ligand/Ion	MALONIC ACID

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	MET A:1 , TYR A:2 , MET A:40 , TRP A:74 , TYR A:83 , PHE A:97 , LEU A:101 , HIS A:105 , ARG A:107 , VAL A:108 , SER A:111 , PHE A:112 , LEU A:115 , ARG A:116 , PRO A:118 , TYR A:134 , SER A:136 , ARG A:138 , LEU A:148 , HOH A:308 , HOH A:312	BINDING SITE FOR RESIDUE 1MF A 201
2	AC2	SOFTWARE	HIS A:16 , HIS A:17 , LYS A:61 , LEU A:66 , ALA A:69 , HOH A:354	BINDING SITE FOR RESIDUE MLA A 202
3	AC3	SOFTWARE	MET B:1 , TYR B:2 , LEU B:4 , MET B:40 , TRP B:74 , TYR B:83 , PHE B:97 , LEU B:101 , HIS B:105 , ARG B:107 , VAL B:108 , SER B:111 , PHE B:112 , ARG B:116 , PRO B:118 , TYR B:134 , SER B:136 , ARG B:138 , LEU B:141 , LEU B:148 , HOH B:319	BINDING SITE FOR RESIDUE 1MF B 201
4	AC4	SOFTWARE	MET B:12 , HIS B:16 , HIS B:17 , LYS B:61 , LEU B:66	BINDING SITE FOR RESIDUE MLA B 202

(no "SS Bond" information available for 4JQH)

Asymmetric Unit

No.	Residues
1	Ser A:111	-	Phe A:112

(no "SAP(SNP)/Variant" information available for 4JQH)

(no "PROSITE Motif" information available for 4JQH)

(no "Exon" information available for 4JQH)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:182
                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhhhhhhhhhh.........eeeeeeee..eeeeeee.....hhhhhhhhhhhhhhhh...eeeeeeehhhhh...eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jqh A   1 MYGLVNKAIQDMISKHHGEDTWEAIKQKAGLEDIDFFVGMEAYSDDVTYHLVGAASEVLGKPAEELLIAFGEYWVTYTSEEGYGELLASAGDSLPEFMENLDNLHARVGLSFPQLRPPAFECQHTSSKSMELHYQSTRAGLAPMVLGLLHGLGKRFQTKVEVTQTAFRETGEDHDIFSIKYE 182
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180

Chain B from PDB  Type:PROTEIN  Length:182
                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhhhhhhhhhhhhh......eeeeeeee..eeeeeee.....hhhhhhhhhhhhhhhh...eeeeeeehhhhh...eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jqh B   1 MYGLVNKAIQDMISKHHGEDTWEAIKQKAGLEDIDFFVGMEAYSDDVTYHLVGAASEVLGKPAEELLIAFGEYWVTYTSEEGYGELLASAGDSLPEFMENLDNLHARVGLSFPQLRPPAFECQHTSSKSMELHYQSTRAGLAPMVLGLLHGLGKRFQTKVEVTQTAFRETGEDHDIFSIKYE 182
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4JQH)

(no "CATH Domain" information available for 4JQH)

(no "Pfam Domain" information available for 4JQH)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Cis Peptide Bonds
		Ser A:111 - Phe A:112	[ RasMol ]

Biological Units
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		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]
		Biological Unit 4	[ Jena3D ]

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	4jqh
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3l6j	STRUCTURE OF CINACIGUAT (BAY 58-2667) BOUND TO NOSTOC H-NOX DOMAIN
4iae	CRYSTAL STRUCTURE OF BAY 60-2770 BOUND TO NOSTOC H-NOX DOMAIN
4iah	CRYSTAL STRUCTURE OF BAY 60-2770 BOUND C139A H-NOX DOMAIN WITH S-NITROSYLATED CONSERVED C122
4iam	CRYSTAL STRUCTURE OF THE C139A MUTANT OF NOSTOC H-NOX DOMAIN

Description

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Ligands, Modified Residues, Ions (2, 4)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

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