3L6J - JenaLib

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Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

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Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   STRUCTURE OF CINACIGUAT (BAY 58-2667) BOUND TO NOSTOC H-NOX DOMAIN

Authors :   F. Martin, F. Van Den Akker

Date :   23 Dec 09 (Deposition) - 12 May 10 (Release) - 18 Aug 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: A,B  (3x)
Biol. Unit 4: A (1x),B (1x)

Keywords :   Guanylyl Cyclase, Bay58-2667, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   F. Martin, P. Baskaran, X. Ma, P. W. Dunten, M. Schaefer, J. P. Stasch, A. Beuve, F. Van Den Akker
Structure Of Cinaciguat (Bay 58-2667) Bound To Nostoc H-Nox Domain Reveals Insights Into Heme-Mimetic Activation Of The Soluble Guanylyl Cyclase.
J. Biol. Chem. V. 285 22651 2010
PubMed-ID: 20463019 | Reference-DOI: 10.1074/JBC.M110.111559

Molecule 1 - ALR2278 PROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET22B
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 1-189
	Gene	:	ALR2278
	Organism Scientific	:	NOSTOC SP.
	Organism Taxid	:	103690
	Strain	:	PCC 7120

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (3x)	:	A	B
Biological Unit 4 (1x)	:	A (1x)	B (1x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	Z90	2	Ligand/Ion	4-({(4-CARBOXYBUTYL)[2-(2-{[4-(2-PHENYLETHYL)BENZYL]OXY}PHENYL)ETHYL]AMINO}METHYL)BENZOIC ACID

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	Z90	1	Ligand/Ion	4-({(4-CARBOXYBUTYL)[2-(2-{[4-(2-PHENYLETHYL)BENZYL]OXY}PHENYL)ETHYL]AMINO}METHYL)BENZOIC ACID

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	Z90	1	Ligand/Ion	4-({(4-CARBOXYBUTYL)[2-(2-{[4-(2-PHENYLETHYL)BENZYL]OXY}PHENYL)ETHYL]AMINO}METHYL)BENZOIC ACID

Biological Unit 3 (1, 6)

No.	Name	Count	Type	Full Name
1	Z90	6	Ligand/Ion	4-({(4-CARBOXYBUTYL)[2-(2-{[4-(2-PHENYLETHYL)BENZYL]OXY}PHENYL)ETHYL]AMINO}METHYL)BENZOIC ACID

Biological Unit 4 (1, 1)

No.	Name	Count	Type	Full Name
1	Z90	1	Ligand/Ion	4-({(4-CARBOXYBUTYL)[2-(2-{[4-(2-PHENYLETHYL)BENZYL]OXY}PHENYL)ETHYL]AMINO}METHYL)BENZOIC ACID

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	MET A:1 , TYR A:2 , TRP A:74 , TYR A:83 , PHE A:97 , LEU A:101 , HIS A:105 , PHE A:112 , LEU A:115 , ARG A:116 , PRO A:118 , TYR A:134 , SER A:136 , ARG A:138 , MET A:144 , LEU A:148	BINDING SITE FOR RESIDUE Z90 A 190
2	AC2	SOFTWARE	MET B:1 , TYR B:2 , LEU B:4 , GLY B:39 , TRP B:74 , THR B:78 , TYR B:83 , PHE B:97 , LEU B:101 , HIS B:105 , VAL B:108 , PHE B:112 , ARG B:116 , PRO B:118 , TYR B:134 , SER B:136 , ARG B:138 , MET B:144 , LEU B:148 , HOH B:222	BINDING SITE FOR RESIDUE Z90 B 190

(no "SS Bond" information available for 3L6J)

(no "Cis Peptide Bond" information available for 3L6J)

(no "SAP(SNP)/Variant" information available for 3L6J)

(no "PROSITE Motif" information available for 3L6J)

(no "Exon" information available for 3L6J)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:182
 aligned with Q8YUQ7_NOSS1 | Q8YUQ7 from UniProtKB/TrEMBL  Length:189

    Alignment length:182
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180  
         Q8YUQ7_NOSS1     1 MYGLVNKAIQDMISKHHGEDTWEAIKQKAGLEDIDFFVGMEAYSDDVTYHLVGAASEVLGKPAEELLIAFGEYWVTYTSEEGYGELLASAGDSLPEFMENLDNLHARVGLSFPQLRPPAFECQHTSSKSMELHYQSTRCGLAPMVLGLLHGLGKRFQTKVEVTQTAFRETGEDHDIFSIKYE 182
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhhhhhhhhhhhhh......eeeee.....eeeeeee.....hhhhhhhhhhhhhhhh...eeeeeee........eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l6j A   1 MYGLVNKAIQDMISKHHGEDTWEAIKQKAGLEDIDFFVGMEAYSDDVTYHLVGAASEVLGKPAEELLIAFGEYWVTYTSEEGYGELLASAGDSLPEFMENLDNLHARVGLSFPQLRPPAFECQHTSSKSMELHYQSTRCGLAPMVLGLLHGLGKRFQTKVEVTQTAFRETGEDHDIFSIKYE 182
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180

Chain B from PDB  Type:PROTEIN  Length:182
 aligned with Q8YUQ7_NOSS1 | Q8YUQ7 from UniProtKB/TrEMBL  Length:189

    Alignment length:182
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180  
         Q8YUQ7_NOSS1     1 MYGLVNKAIQDMISKHHGEDTWEAIKQKAGLEDIDFFVGMEAYSDDVTYHLVGAASEVLGKPAEELLIAFGEYWVTYTSEEGYGELLASAGDSLPEFMENLDNLHARVGLSFPQLRPPAFECQHTSSKSMELHYQSTRCGLAPMVLGLLHGLGKRFQTKVEVTQTAFRETGEDHDIFSIKYE 182
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) HNOB-3l6jB01 B:1-172                                                                                                                                                        ---------- Pfam domains (1)
           Pfam domains (2) HNOB-3l6jB02 B:1-172                                                                                                                                                        ---------- Pfam domains (2)
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.hhhhhhh...hhhhhhhhhhhhhhhhhhhh......eeeeee....eeeeeee.....hhhhhhhhhhhhhhhh...eeeeeeehhhhh...eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l6j B   1 MYGLVNKAIQDMISKHHGEDTWEAIKQKAGLEDIDFFVGMEAYSDDVTYHLVGAASEVLGKPAEELLIAFGEYWVTYTSEEGYGELLASAGDSLPEFMENLDNLHARVGLSFPQLRPPAFECQHTSSKSMELHYQSTRCGLAPMVLGLLHGLGKRFQTKVEVTQTAFRETGEDHDIFSIKYE 182
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3L6J)

(no "CATH Domain" information available for 3L6J)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: HNOX-like (7)

Family: HNOB (5)

Nostoc sp. (strain PCC 7120 / UTEX 2576) (3)

1a	HNOB-3l6jB01	B:1-172
1b	HNOB-3l6jB02	B:1-172

Asymmetric Unit(hide GO term definitions)

Chain A,B (Q8YUQ7_NOSS1 | Q8YUQ7)

molecular function
	GO:0020037		heme binding		Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
	GO:0046872		metal ion binding		Interacting selectively and non-covalently with any metal ion.

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2o09	CRYSTAL STRUCTURE OF THE H-NOX DOMAIN FROM NOSTOC SP. PCC 7120
2o0c	CRYSTAL STRUCTURE OF THE H-NOX DOMAIN FROM NOSTOC SP. PCC 7120 COMPLEXED TO NO
2o0g	CRYSTAL STRUCTURE OF THE H-NOX DOMAIN FROM NOSTOC SP. PCC 7120 COMPLEXED TO CO

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