4IAH - JenaLib

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Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF BAY 60-2770 BOUND C139A H-NOX DOMAIN WITH S-NITROSYLATED CONSERVED C122

Authors :   V. Kumar, F. Van Den Akker

Date :   06 Dec 12 (Deposition) - 20 Nov 13 (Release) - 18 Dec 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: A  (3x)
Biol. Unit 4: B  (3x)
Biol. Unit 5: A,B  (3x)

Keywords :   H-Nox Domain, Soluble Guanylyl Cyclase, Bay 60-2770, S-Nitrosylation, Conserved C122, Heme Binding, No Binding, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   V. Kumar, F. Martin, M. G. Hahn, M. Schaefer, J. S. Stamler, J. P. Stasch F. Van Den Akker
Insights Into Bay 60-2770 Activation And S-Nitrosylation-Dependent Desensitization Of Soluble Guanylyl Cyclase Via Crystal Structures Of Homologous Nosto H-Nox Domain Complexes.
Biochemistry V. 52 3601 2013
PubMed-ID: 23614626 | Reference-DOI: 10.1021/BI301657W

Molecule 1 - ALR2278 PROTEIN
	Chains	:	A, B
	EC Number	:	4.6.1.2
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET22B
	Expression System Strain	:	ROSSETTA 2(DE3) PLYSS
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	HNOX DOMAIN, UNP RESIDUES 1-182
	Gene	:	ALR2278
	Mutation	:	YES
	Organism Scientific	:	NOSTOC SP.
	Organism Taxid	:	103690
	Strain	:	PC 7120

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (3x)	:	A
Biological Unit 4 (3x)	:		B
Biological Unit 5 (3x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 6)

No.	Name	Count	Type	Full Name
1	1DX	2	Ligand/Ion	4-({(4-CARBOXYBUTYL)[2-(5-FLUORO-2-{[4'-(TRIFLUOROMETHYL)BIPHENYL-4-YL]METHOXY}PHENYL)ETHYL]AMINO}METHYL)BENZOIC ACID
2	MLI	2	Ligand/Ion	MALONATE ION
3	SNC	2	Mod. Amino Acid	S-NITROSO-CYSTEINE

Biological Unit 1 (3, 3)

No.	Name	Count	Type	Full Name
1	1DX	1	Ligand/Ion	4-({(4-CARBOXYBUTYL)[2-(5-FLUORO-2-{[4'-(TRIFLUOROMETHYL)BIPHENYL-4-YL]METHOXY}PHENYL)ETHYL]AMINO}METHYL)BENZOIC ACID
2	MLI	1	Ligand/Ion	MALONATE ION
3	SNC	1	Mod. Amino Acid	S-NITROSO-CYSTEINE

Biological Unit 2 (3, 3)

No.	Name	Count	Type	Full Name
1	1DX	1	Ligand/Ion	4-({(4-CARBOXYBUTYL)[2-(5-FLUORO-2-{[4'-(TRIFLUOROMETHYL)BIPHENYL-4-YL]METHOXY}PHENYL)ETHYL]AMINO}METHYL)BENZOIC ACID
2	MLI	1	Ligand/Ion	MALONATE ION
3	SNC	1	Mod. Amino Acid	S-NITROSO-CYSTEINE

Biological Unit 3 (3, 9)

No.	Name	Count	Type	Full Name
1	1DX	3	Ligand/Ion	4-({(4-CARBOXYBUTYL)[2-(5-FLUORO-2-{[4'-(TRIFLUOROMETHYL)BIPHENYL-4-YL]METHOXY}PHENYL)ETHYL]AMINO}METHYL)BENZOIC ACID
2	MLI	3	Ligand/Ion	MALONATE ION
3	SNC	3	Mod. Amino Acid	S-NITROSO-CYSTEINE

Biological Unit 4 (3, 9)

No.	Name	Count	Type	Full Name
1	1DX	3	Ligand/Ion	4-({(4-CARBOXYBUTYL)[2-(5-FLUORO-2-{[4'-(TRIFLUOROMETHYL)BIPHENYL-4-YL]METHOXY}PHENYL)ETHYL]AMINO}METHYL)BENZOIC ACID
2	MLI	3	Ligand/Ion	MALONATE ION
3	SNC	3	Mod. Amino Acid	S-NITROSO-CYSTEINE

Biological Unit 5 (3, 18)

No.	Name	Count	Type	Full Name
1	1DX	6	Ligand/Ion	4-({(4-CARBOXYBUTYL)[2-(5-FLUORO-2-{[4'-(TRIFLUOROMETHYL)BIPHENYL-4-YL]METHOXY}PHENYL)ETHYL]AMINO}METHYL)BENZOIC ACID
2	MLI	6	Ligand/Ion	MALONATE ION
3	SNC	6	Mod. Amino Acid	S-NITROSO-CYSTEINE

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	MET A:1 , TYR A:2 , LEU A:4 , GLY A:39 , TRP A:74 , TYR A:83 , PHE A:97 , HIS A:105 , PHE A:112 , LEU A:115 , ARG A:116 , PRO A:118 , TYR A:134 , SER A:136 , ARG A:138 , MET A:144 , LEU A:148 , LEU A:152 , HOH A:304	BINDING SITE FOR RESIDUE 1DX A 201
2	AC2	SOFTWARE	HIS A:16 , HIS A:17 , LYS A:61 , LYS B:180	BINDING SITE FOR RESIDUE MLI A 202
3	AC3	SOFTWARE	MET B:1 , TYR B:2 , LEU B:4 , GLY B:39 , TRP B:74 , TYR B:83 , PHE B:97 , LEU B:101 , HIS B:105 , PHE B:112 , LEU B:115 , ARG B:116 , PRO B:118 , TYR B:134 , SER B:136 , ARG B:138 , LEU B:148 , HOH B:316	BINDING SITE FOR RESIDUE 1DX B 201
4	AC4	SOFTWARE	MET B:12 , HIS B:16 , HIS B:17 , LEU B:59 , LYS B:61 , LEU B:66	BINDING SITE FOR RESIDUE MLI B 202

(no "SS Bond" information available for 4IAH)

(no "Cis Peptide Bond" information available for 4IAH)

(no "SAP(SNP)/Variant" information available for 4IAH)

(no "PROSITE Motif" information available for 4IAH)

(no "Exon" information available for 4IAH)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:182
                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.hhhhhhh...hhhhhhhhhhhhhhhhhh........eeeee.....eeeeeee.....hhhhhhhhhhhhhhhh...eeeeeeehhhhh...eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iah A   1 MYGLVNKAIQDMISKHHGEDTWEAIKQKAGLEDIDFFVGMEAYSDDVTYHLVGAASEVLGKPAEELLIAFGEYWVTYTSEEGYGELLASAGDSLPEFMENLDNLHARVGLSFPQLRPPAFEcQHTSSKSMELHYQSTRAGLAPMVLGLLHGLGKRFQTKVEVTQTAFRETGEDHDIFSIKYE 182
                                    10        20        30        40        50        60        70        80        90       100       110       120 |     130       140       150       160       170       180  
                                                                                                                                                   122-SNC

Chain B from PDB  Type:PROTEIN  Length:182
                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh.hhhhhhhhhhhhh...............hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh....hhhhhhh...hhhhhhhhhhhhhhhhhhhh......eeeeee....eeeeeee.....hhhhhhhhhhhhhhhh...eeeeeeehhhhh...eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iah B   1 MYGLVNKAIQDMISKHHGEDTWEAIKQKAGLEDIDFFVGMEAYSDDVTYHLVGAASEVLGKPAEELLIAFGEYWVTYTSEEGYGELLASAGDSLPEFMENLDNLHARVGLSFPQLRPPAFEcQHTSSKSMELHYQSTRAGLAPMVLGLLHGLGKRFQTKVEVTQTAFRETGEDHDIFSIKYE 182
                                    10        20        30        40        50        60        70        80        90       100       110       120 |     130       140       150       160       170       180  
                                                                                                                                                   122-SNC

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4IAH)

(no "CATH Domain" information available for 4IAH)

(no "Pfam Domain" information available for 4IAH)

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2o09	CRYSTAL STRUCTURE OF THE H-NOX DOMAIN FROM NOSTOC SP. PCC 7120
2o0c	CRYSTAL STRUCTURE OF THE H-NOX DOMAIN FROM NOSTOC SP. PCC 7120 COMPLEXED TO NO
2o0g	CRYSTAL STRUCTURE OF THE H-NOX DOMAIN FROM NOSTOC SP. PCC 7120 COMPLEXED TO CO
3l6j	STRUCTURE OF CINACIGUAT (BAY 58-2667) BOUND TO NOSTOC H-NOX DOMAIN
4iae	CRYSTAL STRUCTURE OF BAY 60-2770 BOUND TO NOSTOC H-NOX DOMAIN
4iam	CRYSTAL STRUCTURE OF THE C139A MUTANT OF NOSTOC H-NOX DOMAIN

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