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(-) Description

Title :  N79R MUTANT OF N-ACETYLORNITHINE AMINOTRANSFERASE COMPLEXED WITH L-CANALINE
 
Authors :  S. Bisht, S. R. Bharath, M. R. N. Murthy
Date :  27 Feb 13  (Deposition) - 26 Mar 14  (Release) - 26 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Plp Dependent Fold Type I Sub Class Ii Aminotransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Bisht, S. R. Bharath, M. R. N. Murthy
Conformational Transitions, Ligand Specificity And Catalysi In N-Acetylornithine Aminotransferase: Implications On Drug Designing And Rational Enzyme Engineering In Omega Aminotransferases
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ACETYLORNITHINE/SUCCINYLDIAMINOPIMELATE AMINOTRANSFERASE
    Chains: A, B
    EC Number: 2.6.1.11, 2.6.1.17
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PRSET C
    Expression System Strain: BL21 (DE3) ROSETTA
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: ARGD, DAPC, DTU, STM3468
    Mutation: YES
    Organism Scientific: SALMONELLA TYPHIMURIUM
    Organism Taxid: 99287
    Strain: LT2
    Synonym: ACOAT, DAPATASE, SUCCINYLDIAMINOPIMELATE TRANSFERASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 20)

Asymmetric/Biological Unit (4, 20)
No.NameCountTypeFull Name
1ACT10Ligand/IonACETATE ION
2EDO6Ligand/Ion1,2-ETHANEDIOL
3NA2Ligand/IonSODIUM ION
4P002Ligand/Ion(2S)-2-AZANYL-4-[(E)-[2-METHYL-3-OXIDANYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]OXY-BUTANOIC ACID

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:57 , HIS A:58 , CYS A:59 , HIS A:60 , LEU A:63 , GLY A:259 , HOH A:619 , TRP B:75BINDING SITE FOR RESIDUE EDO A 501
02AC2SOFTWARESER A:78 , PHE A:81 , EDO A:503 , HOH A:604 , HOH A:629 , ALA B:48 , GLY B:50 , LEU B:369BINDING SITE FOR RESIDUE ACT A 502
03AC3SOFTWAREHIS A:76 , THR A:77 , SER A:78 , PHE A:81 , ACT A:502 , HOH A:604 , HOH A:640 , ASP B:46 , GLY B:50 , HIS B:58 , MET B:367BINDING SITE FOR RESIDUE EDO A 503
04AC4SOFTWARETRP A:37 , HOH A:846BINDING SITE FOR RESIDUE ACT A 504
05AC5SOFTWAREASP A:46 , GLY A:50 , HIS A:58 , MET A:367 , HOH A:663 , HOH A:685 , HIS B:76 , THR B:77 , SER B:78 , PHE B:81 , ACT B:507BINDING SITE FOR RESIDUE EDO A 505
06AC6SOFTWARESER A:128 , ASP A:185 , HIS A:186BINDING SITE FOR RESIDUE EDO A 506
07AC7SOFTWARELYS A:133 , ILE A:168 , HIS A:170 , HOH A:668 , HOH A:684 , HOH A:784BINDING SITE FOR RESIDUE ACT A 507
08AC8SOFTWARETYR A:122 , HIS A:127 , GLN A:220 , LEU A:222 , HOH A:690 , HOH A:835BINDING SITE FOR RESIDUE ACT A 508
09AC9SOFTWAREILE A:94 , THR A:97 , PHE A:98 , ALA A:99 , HOH A:724 , HOH A:745 , HOH A:860BINDING SITE FOR RESIDUE NA A 509
10BC1SOFTWARETHR A:205 , PRO A:206 , GLU A:207 , HOH A:737 , THR B:205BINDING SITE FOR RESIDUE ACT A 510
11BC2SOFTWAREILE A:51 , SER A:107 , GLY A:108 , THR A:109 , ASN A:112 , PHE A:141 , HIS A:142 , GLU A:193 , GLU A:198 , ASP A:226 , VAL A:228 , GLN A:229 , LYS A:255 , HOH A:806 , HOH B:784BINDING SITE FOR RESIDUE P00 A 511
12BC3SOFTWARETRP A:75 , GLY B:57 , HIS B:58 , CYS B:59 , HIS B:60 , LEU B:63 , GLY B:259 , HOH B:609BINDING SITE FOR RESIDUE EDO B 501
13BC4SOFTWARELYS B:133 , ILE B:168 , HIS B:170 , HOH B:659 , HOH B:711 , HOH B:724BINDING SITE FOR RESIDUE ACT B 502
14BC5SOFTWARESER B:128 , ASP B:185 , HIS B:186BINDING SITE FOR RESIDUE EDO B 503
15BC6SOFTWARETYR B:122 , HIS B:127 , GLN B:220 , HOH B:697BINDING SITE FOR RESIDUE ACT B 504
16BC7SOFTWAREHOH A:744 , SER B:107 , GLY B:108 , THR B:109 , ASN B:112 , PHE B:141 , HIS B:142 , GLU B:193 , GLU B:198 , ASP B:226 , VAL B:228 , GLN B:229 , LYS B:255 , HOH B:745 , HOH B:803BINDING SITE FOR RESIDUE P00 B 505
17BC8SOFTWAREVAL A:80 , ALA B:22 , PRO B:23 , PHE B:26 , TYR B:359 , ALA B:362 , HOH B:650 , HOH B:808BINDING SITE FOR RESIDUE ACT B 506
18BC9SOFTWAREALA A:48 , GLY A:50 , LEU A:369 , EDO A:505 , HOH A:685 , SER B:78 , PHE B:81 , HOH B:676BINDING SITE FOR RESIDUE ACT B 507
19CC1SOFTWAREILE B:94 , THR B:97 , PHE B:98 , ALA B:99 , HOH B:736 , HOH B:771BINDING SITE FOR RESIDUE NA B 508
20CC2SOFTWARETHR A:205 , HOH A:864 , THR B:205 , PRO B:206 , GLU B:207 , HOH B:791BINDING SITE FOR RESIDUE ACT B 509

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JEZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JEZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JEZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JEZ)

(-) Exons   (0, 0)

(no "Exon" information available for 4JEZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:378
                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains d4jeza_ A: automated matches                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeee..eeee....eeee.hhhhhh......hhhhhhhhhhhhh..........hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhhh.....eeeee.......hhhhhhhh.hhhhhh........eeee...hhhhhhhhh...eeeeee..ee.....ee.hhhhhhhhhhhhhhhh.eeeee............hhhhhhh....eeeehhhhhh....eeeeehhhhhh....ee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee..eeeeee.hhhh.hhhhhhhhhhhh.ee.ee....eeee......hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4jez A  24 ADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSRVFTNEPALRLGRKLIDATFAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVKAVMDDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDILTSAKALGGGFPVSAMLTTQEIASAFGSTYGGNPLACAVAGATFDIINTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKYKGRARDFLYAGAEAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRFAQAVGKVVAL 406
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273  ||   288       298       308       318       328       338       348       358       368       378       388       398        
                                                                                                                                                                                                                                                                                      276|                                                                                                                            
                                                                                                                                                                                                                                                                                       282                                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:383
                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains d4jezb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeee..eeee....eeee.hhhhhh......hhhhhhhhhhhhh..........hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhhh.....eeeee.......hhhhhhhh.hhhhhh........eeee...hhhhhhhhh...eeeeee..ee.....ee.hhhhhhhhhhhhhhhh.eeeee............hhhhhhh....eeeehhhhhh....eeeeehhhhhh....ee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee..eeeeee.hhhh.hhhhhhhhhhhh.ee.ee....eeee......hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jez B  18 LPVYAPADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSRVFTNEPALRLGRKLIDATFAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVKAVMDDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDILTSAKALGGGFPVSAMLTTQEIASAFGSTYGGNPLACAVAGATFDIINTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKYKGRARDFLYAGAEAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRFAQAVGKVVA 405
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       282       292       302       312       322       332       342       352       362       372       382       392       402   
                                                                                                                                                                                                                                                                                            276|                                                                                                                           
                                                                                                                                                                                                                                                                                             282
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JEZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JEZ)

(-) Gene Ontology  (15, 15)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ARGD_SALTY | P40732: 2pb0 2pb2 4jev 4jew 4jex 4jey 4jf0 4jf1

(-) Related Entries Specified in the PDB File

2pb0 2pb2 4jev 4jew 4jex 4jey 4jf0 4jf1