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4JEZ
Asym. Unit
Info
Asym.Unit (137 KB)
Biol.Unit 1 (131 KB)
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(1)
Title
:
N79R MUTANT OF N-ACETYLORNITHINE AMINOTRANSFERASE COMPLEXED WITH L-CANALINE
Authors
:
S. Bisht, S. R. Bharath, M. R. N. Murthy
Date
:
27 Feb 13 (Deposition) - 26 Mar 14 (Release) - 26 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Plp Dependent Fold Type I Sub Class Ii Aminotransferase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Bisht, S. R. Bharath, M. R. N. Murthy
Conformational Transitions, Ligand Specificity And Catalysi In N-Acetylornithine Aminotransferase: Implications On Drug Designing And Rational Enzyme Engineering In Omega Aminotransferases
To Be Published
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Hetero Components
(4, 20)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
1j: ACETATE ION (ACTj)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
4a: (2S)-2-AZANYL-4-[(E)-[2-METHYL-3-O... (P00a)
4b: (2S)-2-AZANYL-4-[(E)-[2-METHYL-3-O... (P00b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
10
Ligand/Ion
ACETATE ION
2
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
3
NA
2
Ligand/Ion
SODIUM ION
4
P00
2
Ligand/Ion
(2S)-2-AZANYL-4-[(E)-[2-METHYL-3-OXIDANYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]OXY-BUTANOIC ACID
[
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:57 , HIS A:58 , CYS A:59 , HIS A:60 , LEU A:63 , GLY A:259 , HOH A:619 , TRP B:75
BINDING SITE FOR RESIDUE EDO A 501
02
AC2
SOFTWARE
SER A:78 , PHE A:81 , EDO A:503 , HOH A:604 , HOH A:629 , ALA B:48 , GLY B:50 , LEU B:369
BINDING SITE FOR RESIDUE ACT A 502
03
AC3
SOFTWARE
HIS A:76 , THR A:77 , SER A:78 , PHE A:81 , ACT A:502 , HOH A:604 , HOH A:640 , ASP B:46 , GLY B:50 , HIS B:58 , MET B:367
BINDING SITE FOR RESIDUE EDO A 503
04
AC4
SOFTWARE
TRP A:37 , HOH A:846
BINDING SITE FOR RESIDUE ACT A 504
05
AC5
SOFTWARE
ASP A:46 , GLY A:50 , HIS A:58 , MET A:367 , HOH A:663 , HOH A:685 , HIS B:76 , THR B:77 , SER B:78 , PHE B:81 , ACT B:507
BINDING SITE FOR RESIDUE EDO A 505
06
AC6
SOFTWARE
SER A:128 , ASP A:185 , HIS A:186
BINDING SITE FOR RESIDUE EDO A 506
07
AC7
SOFTWARE
LYS A:133 , ILE A:168 , HIS A:170 , HOH A:668 , HOH A:684 , HOH A:784
BINDING SITE FOR RESIDUE ACT A 507
08
AC8
SOFTWARE
TYR A:122 , HIS A:127 , GLN A:220 , LEU A:222 , HOH A:690 , HOH A:835
BINDING SITE FOR RESIDUE ACT A 508
09
AC9
SOFTWARE
ILE A:94 , THR A:97 , PHE A:98 , ALA A:99 , HOH A:724 , HOH A:745 , HOH A:860
BINDING SITE FOR RESIDUE NA A 509
10
BC1
SOFTWARE
THR A:205 , PRO A:206 , GLU A:207 , HOH A:737 , THR B:205
BINDING SITE FOR RESIDUE ACT A 510
11
BC2
SOFTWARE
ILE A:51 , SER A:107 , GLY A:108 , THR A:109 , ASN A:112 , PHE A:141 , HIS A:142 , GLU A:193 , GLU A:198 , ASP A:226 , VAL A:228 , GLN A:229 , LYS A:255 , HOH A:806 , HOH B:784
BINDING SITE FOR RESIDUE P00 A 511
12
BC3
SOFTWARE
TRP A:75 , GLY B:57 , HIS B:58 , CYS B:59 , HIS B:60 , LEU B:63 , GLY B:259 , HOH B:609
BINDING SITE FOR RESIDUE EDO B 501
13
BC4
SOFTWARE
LYS B:133 , ILE B:168 , HIS B:170 , HOH B:659 , HOH B:711 , HOH B:724
BINDING SITE FOR RESIDUE ACT B 502
14
BC5
SOFTWARE
SER B:128 , ASP B:185 , HIS B:186
BINDING SITE FOR RESIDUE EDO B 503
15
BC6
SOFTWARE
TYR B:122 , HIS B:127 , GLN B:220 , HOH B:697
BINDING SITE FOR RESIDUE ACT B 504
16
BC7
SOFTWARE
HOH A:744 , SER B:107 , GLY B:108 , THR B:109 , ASN B:112 , PHE B:141 , HIS B:142 , GLU B:193 , GLU B:198 , ASP B:226 , VAL B:228 , GLN B:229 , LYS B:255 , HOH B:745 , HOH B:803
BINDING SITE FOR RESIDUE P00 B 505
17
BC8
SOFTWARE
VAL A:80 , ALA B:22 , PRO B:23 , PHE B:26 , TYR B:359 , ALA B:362 , HOH B:650 , HOH B:808
BINDING SITE FOR RESIDUE ACT B 506
18
BC9
SOFTWARE
ALA A:48 , GLY A:50 , LEU A:369 , EDO A:505 , HOH A:685 , SER B:78 , PHE B:81 , HOH B:676
BINDING SITE FOR RESIDUE ACT B 507
19
CC1
SOFTWARE
ILE B:94 , THR B:97 , PHE B:98 , ALA B:99 , HOH B:736 , HOH B:771
BINDING SITE FOR RESIDUE NA B 508
20
CC2
SOFTWARE
THR A:205 , HOH A:864 , THR B:205 , PRO B:206 , GLU B:207 , HOH B:791
BINDING SITE FOR RESIDUE ACT B 509
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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Sorry, no Info available
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4jeza_ (A:)
1b: SCOP_d4jezb_ (B:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
automated matches
(163)
Protein domain
:
automated matches
(163)
Salmonella typhimurium [TaxId: 99287]
(9)
1a
d4jeza_
A:
1b
d4jezb_
B:
[
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Asymmetric Unit 1
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Example Commands
Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (137 KB)
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