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(-) Description

Title :  N-ACETYLORNITHINE AMINOTRANSFERASE FROM S. TYPHIMURIUM COMPLEXED WITH L-CANALINE
 
Authors :  S. Bisht, S. R. Bharath, M. R. N. Murthy
Date :  27 Feb 13  (Deposition) - 26 Mar 14  (Release) - 26 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.48
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Plp Dependent Fold Type I Sub Class Ii Aminotransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Bisht, S. R. Bharath, M. R. N. Murthy
Conformational Transitions, Ligand Specificity And Catalysi In N-Acetylornithine Aminotransferase: Implications On Drug Designing And Rational Enzyme Engineering In Omega Aminotransferases.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ACETYLORNITHINE/SUCCINYLDIAMINOPIMELATE AMINOTRANSFERASE
    Chains: A, B
    EC Number: 2.6.1.11, 2.6.1.17
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PRSET C
    Expression System Strain: BL21 (DE3) ROSETTA
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: ARGD, DAPC, DTU, STM3468
    Mutation: YES
    Organism Scientific: SALMONELLA TYPHIMURIUM
    Organism Taxid: 99287
    Strain: LT2
    Synonym: ACOAT, DAPATASE, SUCCINYLDIAMINOPIMELATE TRANSFERASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 17)

Asymmetric/Biological Unit (4, 17)
No.NameCountTypeFull Name
1ACT5Ligand/IonACETATE ION
2EDO9Ligand/Ion1,2-ETHANEDIOL
3P002Ligand/Ion(2S)-2-AZANYL-4-[(E)-[2-METHYL-3-OXIDANYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]OXY-BUTANOIC ACID
4TNF1Ligand/IonPICRIC ACID

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:107 , GLY A:108 , THR A:109 , ASN A:112 , PHE A:141 , HIS A:142 , GLY A:143 , ARG A:144 , GLU A:193 , GLU A:198 , ASP A:226 , VAL A:228 , GLN A:229 , LYS A:255 , HOH A:636 , HOH A:666 , HOH A:697 , HOH A:700 , HOH A:708 , GLY B:282 , SER B:283 , THR B:284 , HOH B:633BINDING SITE FOR RESIDUE P00 A 501
02AC2SOFTWARESER A:78 , VAL A:80 , PHE A:81 , EDO A:504 , HOH A:620 , HOH A:677 , ALA B:48 , GLY B:50 , LEU B:369BINDING SITE FOR RESIDUE ACT A 502
03AC3SOFTWAREGLY A:57 , HIS A:58 , CYS A:59 , HIS A:60 , LEU A:63 , GLY A:259 , HOH A:605 , TRP B:75BINDING SITE FOR RESIDUE EDO A 503
04AC4SOFTWAREHIS A:76 , THR A:77 , SER A:78 , PHE A:81 , ACT A:502 , HOH A:620 , HOH A:833 , ASP B:46 , GLY B:50 , HIS B:58 , MET B:367BINDING SITE FOR RESIDUE EDO A 504
05AC5SOFTWARETYR A:122 , GLU A:271 , HOH A:651 , HOH A:687 , HOH A:757BINDING SITE FOR RESIDUE EDO A 505
06AC6SOFTWARESER A:128 , LYS A:131 , ASP A:185 , HIS A:186 , HOH A:879BINDING SITE FOR RESIDUE EDO A 506
07AC7SOFTWARELYS A:30 , LYS A:32 , TRP A:37 , GLY A:41 , LEU B:18 , PRO B:19 , TYR B:21 , ARG B:355 , TYR B:359BINDING SITE FOR RESIDUE TNF A 507
08AC8SOFTWARELYS A:133 , ILE A:168 , HIS A:170 , HOH A:616 , HOH A:675 , HOH A:680 , HOH A:707BINDING SITE FOR RESIDUE ACT A 508
09AC9SOFTWARETHR A:6 , ILE A:8 , HOH A:844 , ARG B:88BINDING SITE FOR RESIDUE ACT A 509
10BC1SOFTWAREVAL A:80 , ALA B:22 , PRO B:23 , PHE B:26 , TYR B:359 , ALA B:362 , HOH B:676 , HOH B:813BINDING SITE FOR RESIDUE ACT B 501
11BC2SOFTWARETRP A:75 , GLY B:57 , HIS B:58 , CYS B:59 , HIS B:60 , LEU B:63 , GLY B:259 , HOH B:640BINDING SITE FOR RESIDUE EDO B 502
12BC3SOFTWARETYR B:122 , GLU B:271 , ILE B:272 , HOH B:698 , HOH B:727BINDING SITE FOR RESIDUE EDO B 503
13BC4SOFTWAREPHE A:13 , ASN B:79 , THR B:82 , ASN B:83 , ALA B:86 , GLY B:287 , HOH B:638 , HOH B:710BINDING SITE FOR RESIDUE EDO B 504
14BC5SOFTWARELYS B:133 , ILE B:168 , HIS B:170 , HOH B:693 , HOH B:695 , HOH B:744 , HOH B:862BINDING SITE FOR RESIDUE ACT B 505
15BC6SOFTWAREVAL A:80 , LEU B:369 , ASN B:370 , ARG B:377 , HOH B:907BINDING SITE FOR RESIDUE EDO B 506
16BC7SOFTWARESER B:128 , ASP B:185 , HIS B:186BINDING SITE FOR RESIDUE EDO B 507
17BC8SOFTWAREHOH A:782 , SER B:107 , GLY B:108 , THR B:109 , ASN B:112 , PHE B:141 , HIS B:142 , GLU B:193 , GLU B:198 , ASP B:226 , VAL B:228 , GLN B:229 , LYS B:255 , HOH B:721BINDING SITE FOR RESIDUE P00 B 508

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JEW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JEW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JEW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JEW)

(-) Exons   (0, 0)

(no "Exon" information available for 4JEW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:397
                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains d4jewa_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh..........eeeee..eeee....eeee.hhhhhh......hhhhhhhhhhhhh..........hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhhh.....eeeee.......hhhhhhhh.hhhhhh........eeee...hhhhhhhhh...eeeeee..ee.....ee.hhhhhhhhhhhhhhhh.eeeee............hhhhhhh....eeeehhhhhh....eeeeehhhhhh....eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee..eeeeee.hhhh.hhhhhhhhhhhh.ee.ee....eeee......hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jew A   6 TAITRATFDEVILPVYAPADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNEPALRLGRKLIDATFAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVKAVMDDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDILTSAKALGGGFPVSAMLTTQEIASAFGSTYGGNPLACAVAGATFDIINTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKYKGRARDFLYAGAEAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRFAQAVGKVVALE 407
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275||     290       300       310       320       330       340       350       360       370       380       390       400       
                                                                                                                                                                                                                                                                                                        276|                                                                                                                             
                                                                                                                                                                                                                                                                                                         282                                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:389
                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains d4jewb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeee..eeee....eeee.hhhhhh......hhhhhhhhhhhhh..........hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhhh.....eeeee.......hhhhhhhh.hhhhhh........eeee...hhhhhhhhh...eeeeee..ee.....ee.hhhhhhhhhhhhhhhh.eeeee............hhhhhhh....eeeehhhhhh....eeeeehhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee..eeeeee.hhhh.hhhhhhhhhhhh.ee.ee....eeee......hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jew B  16 VILPVYAPADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNEPALRLGRKLIDATFAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVKAVMDDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDILTSAKALGGGFPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGATFDIINTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKYKGRARDFLYAGAEAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRFAQAVGKVV 404
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JEW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JEW)

(-) Gene Ontology  (15, 15)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ARGD_SALTY | P40732: 2pb0 2pb2 4jev 4jex 4jey 4jez 4jf0 4jf1

(-) Related Entries Specified in the PDB File

2pb0 2pb2 4jev 4jex 4jey 4jez 4jf0 4jf1