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Sequence, Chains, Asymmetric and Biological Units

Title SECRETED CHLAMYDIAL PROTEIN PGP3, COILED-COIL DELETION
Keywords VIRULENCE FACTOR, SECRETED PROTEIN, CHLAMYDIA, INFLAMMATORY TNF, CELL INVASION
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4JDO     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   VIRULENCE PLASMID PROTEIN PGP3-D  A 215 1546 32
2  Protein   VIRULENCE PLASMID PROTEIN PGP3-D  B 218 1558 40
3  Protein   VIRULENCE PLASMID PROTEIN PGP3-D  C 217 1553 40
4  Protein   VIRULENCE PLASMID PROTEIN PGP3-D  D 217 1561 32
5  Protein   VIRULENCE PLASMID PROTEIN PGP3-D  E 215 1540 40
6  Protein   VIRULENCE PLASMID PROTEIN PGP3-D  F 217 1553 40
7  Protein   VIRULENCE PLASMID PROTEIN PGP3-D  G 217 1553 40
8  Protein   VIRULENCE PLASMID PROTEIN PGP3-D  H 216 1546 40
9  Protein   VIRULENCE PLASMID PROTEIN PGP3-D  I 217 1553 40
10  Ligand   VIRULENCE PLASMID PROTEIN PGP3-D  A 1 0 1
11  Ligand   VIRULENCE PLASMID PROTEIN PGP3-D  D 1 0 1
12  Ligand   VIRULENCE PLASMID PROTEIN PGP3-D  G 1 0 1
13 Water     714 0 714
total       2666 13963 1061

Proteins
Unit 1 GLY2 ASN3 SER4 GLY5 PHE6 TYR7 LEU8 TYR9 ASN10 THR11 GLU12 ASN13 CYS14 VAL15 PHE16 ALA17 ASP18 ASN19 ILE20 LYS21 VAL22 GLY23 GLN24 MSE25 THR26 GLU27 PRO28 LEU29 LYS30 ASP31 GLN32 GLN33 ILE34 ILE35 LEU36 GLY37 THR38 LYS39 SER40 THR41 PRO42 VAL43 ALA44 ALA45 LYS46 MSE47 THR48 ALA49 SER50 ASP51 GLY52 ILE53 SER54 LEU55 THR56 VAL57 SER58 ASN59 ASN60 SER61 SER62 THR63 ASN64 ALA65 SER66 ILE67 THR68 ILE69 GLY70 LEU71 LEU117 LYS118 ALA119 PHE120 ASN121 ASN122 PHE123 PRO124 ILE125 THR126 ASN127 LYS128 ILE129 GLN130 CYS131 ASN132 GLY133 LEU134 PHE135 THR136 PRO137 SER138 ASN139 ILE140 GLU141 THR142 LEU143 LEU144 GLY145 GLY146 THR147 GLU148 ILE149 GLY150 LYS151 PHE152 THR153 VAL154 THR155 PRO156 LYS157 SER158 SER159 GLY160 SER161 MSE162 PHE163 LEU164 VAL165 SER166 ALA167 ASP168 ILE169 ILE170 ALA171 SER172 ARG173 MSE174 GLU175 GLY176 GLY177 VAL178 VAL179 LEU180 ALA181 LEU182 VAL183 ARG184 GLU185 GLY186 ASP187 SER188 LYS189 PRO190 CYS191 ALA192 ILE193 SER194 TYR195 GLY196 TYR197 SER198 SER199 GLY200 VAL201 PRO202 ASN203 LEU204 CYS205 SER206 LEU207 ARG208 THR209 SER210 ILE211 THR212 ASN213 THR214 GLY215 LEU216 THR217 PRO218 THR219 THR220 TYR221 SER222 LEU223 ARG224 VAL225 GLY226 GLY227 LEU228 GLU229 SER230 GLY231 VAL232 VAL233 TRP234 VAL235 ASN236 ALA237 LEU238 SER239 ASN240 GLY241 ASN242 ASP243 ILE244 LEU245 GLY246 ILE247 THR248 ASN249 THR250 SER251 ASN252 VAL253 SER254 PHE255 LEU256 GLU257 VAL258 ILE259 PRO260 GLN261
Unit 2 MSE1 GLY2 ASN3 SER4 GLY5 PHE6 TYR7 LEU8 TYR9 ASN10 THR11 GLU12 ASN13 CYS14 VAL15 PHE16 ALA17 ASP18 ASN19 ILE20 LYS21 VAL22 GLY23 GLN24 MSE25 THR26 GLU27 PRO28 LEU29 LYS30 ASP31 GLN32 GLN33 ILE34 ILE35 LEU36 GLY37 THR38 LYS39 SER40 THR41 PRO42 VAL43 ALA44 ALA45 LYS46 MSE47 THR48 ALA49 SER50 ASP51 GLY52 ILE53 SER54 LEU55 THR56 VAL57 SER58 ASN59 ASN60 SER61 SER62 THR63 ASN64 ALA65 SER66 ILE67 THR68 ILE69 GLY70 LEU71 LEU117 LYS118 ALA119 PHE120 ASN121 ASN122 PHE123 PRO124 ILE125 THR126 ASN127 LYS128 ILE129 GLN130 CYS131 ASN132 GLY133 LEU134 PHE135 THR136 PRO137 SER138 ASN139 ILE140 GLU141 THR142 LEU143 LEU144 GLY145 GLY146 THR147 GLU148 ILE149 GLY150 LYS151 PHE152 THR153 VAL154 THR155 PRO156 LYS157 SER158 SER159 GLY160 SER161 MSE162 PHE163 LEU164 VAL165 SER166 ALA167 ASP168 ILE169 ILE170 ALA171 SER172 ARG173 MSE174 GLU175 GLY176 GLY177 VAL178 VAL179 LEU180 ALA181 LEU182 VAL183 ARG184 GLU185 GLY186 ASP187 SER188 LYS189 PRO190 CYS191 ALA192 ILE193 SER194 TYR195 GLY196 TYR197 SER198 SER199 GLY200 VAL201 PRO202 ASN203 LEU204 CYS205 SER206 LEU207 ARG208 THR209 SER210 ILE211 THR212 ASN213 THR214 GLY215 LEU216 THR217 PRO218 THR219 THR220 TYR221 SER222 LEU223 ARG224 VAL225 GLY226 GLY227 LEU228 GLU229 SER230 GLY231 VAL232 VAL233 TRP234 VAL235 ASN236 ALA237 LEU238 SER239 ASN240 GLY241 ASN242 ASP243 ILE244 LEU245 GLY246 ILE247 THR248 ASN249 THR250 SER251 ASN252 VAL253 SER254 PHE255 LEU256 GLU257 VAL258 ILE259 PRO260 GLN261 THR262 ASN263
Unit 3 MSE1 GLY2 ASN3 SER4 GLY5 PHE6 TYR7 LEU8 TYR9 ASN10 THR11 GLU12 ASN13 CYS14 VAL15 PHE16 ALA17 ASP18 ASN19 ILE20 LYS21 VAL22 GLY23 GLN24 MSE25 THR26 GLU27 PRO28 LEU29 LYS30 ASP31 GLN32 GLN33 ILE34 ILE35 LEU36 GLY37 THR38 LYS39 SER40 THR41 PRO42 VAL43 ALA44 ALA45 LYS46 MSE47 THR48 ALA49 SER50 ASP51 GLY52 ILE53 SER54 LEU55 THR56 VAL57 SER58 ASN59 ASN60 SER61 SER62 THR63 ASN64 ALA65 SER66 ILE67 THR68 ILE69 GLY70 LEU71 LEU117 LYS118 ALA119 PHE120 ASN121 ASN122 PHE123 PRO124 ILE125 THR126 ASN127 LYS128 ILE129 GLN130 CYS131 ASN132 GLY133 LEU134 PHE135 THR136 PRO137 SER138 ASN139 ILE140 GLU141 THR142 LEU143 LEU144 GLY145 GLY146 THR147 GLU148 ILE149 GLY150 LYS151 PHE152 THR153 VAL154 THR155 PRO156 LYS157 SER158 SER159 GLY160 SER161 MSE162 PHE163 LEU164 VAL165 SER166 ALA167 ASP168 ILE169 ILE170 ALA171 SER172 ARG173 MSE174 GLU175 GLY176 GLY177 VAL178 VAL179 LEU180 ALA181 LEU182 VAL183 ARG184 GLU185 GLY186 ASP187 SER188 LYS189 PRO190 CYS191 ALA192 ILE193 SER194 TYR195 GLY196 TYR197 SER198 SER199 GLY200 VAL201 PRO202 ASN203 LEU204 CYS205 SER206 LEU207 ARG208 THR209 SER210 ILE211 THR212 ASN213 THR214 GLY215 LEU216 THR217 PRO218 THR219 THR220 TYR221 SER222 LEU223 ARG224 VAL225 GLY226 GLY227 LEU228 GLU229 SER230 GLY231 VAL232 VAL233 TRP234 VAL235 ASN236 ALA237 LEU238 SER239 ASN240 GLY241 ASN242 ASP243 ILE244 LEU245 GLY246 ILE247 THR248 ASN249 THR250 SER251 ASN252 VAL253 SER254 PHE255 LEU256 GLU257 VAL258 ILE259 PRO260 GLN261 THR262
Unit 4 GLY2 ASN3 SER4 GLY5 PHE6 TYR7 LEU8 TYR9 ASN10 THR11 GLU12 ASN13 CYS14 VAL15 PHE16 ALA17 ASP18 ASN19 ILE20 LYS21 VAL22 GLY23 GLN24 MSE25 THR26 GLU27 PRO28 LEU29 LYS30 ASP31 GLN32 GLN33 ILE34 ILE35 LEU36 GLY37 THR38 LYS39 SER40 THR41 PRO42 VAL43 ALA44 ALA45 LYS46 MSE47 THR48 ALA49 SER50 ASP51 GLY52 ILE53 SER54 LEU55 THR56 VAL57 SER58 ASN59 ASN60 SER61 SER62 THR63 ASN64 ALA65 SER66 ILE67 THR68 ILE69 GLY70 LEU71 LEU117 LYS118 ALA119 PHE120 ASN121 ASN122 PHE123 PRO124 ILE125 THR126 ASN127 LYS128 ILE129 GLN130 CYS131 ASN132 GLY133 LEU134 PHE135 THR136 PRO137 SER138 ASN139 ILE140 GLU141 THR142 LEU143 LEU144 GLY145 GLY146 THR147 GLU148 ILE149 GLY150 LYS151 PHE152 THR153 VAL154 THR155 PRO156 LYS157 SER158 SER159 GLY160 SER161 MSE162 PHE163 LEU164 VAL165 SER166 ALA167 ASP168 ILE169 ILE170 ALA171 SER172 ARG173 MSE174 GLU175 GLY176 GLY177 VAL178 VAL179 LEU180 ALA181 LEU182 VAL183 ARG184 GLU185 GLY186 ASP187 SER188 LYS189 PRO190 CYS191 ALA192 ILE193 SER194 TYR195 GLY196 TYR197 SER198 SER199 GLY200 VAL201 PRO202 ASN203 LEU204 CYS205 SER206 LEU207 ARG208 THR209 SER210 ILE211 THR212 ASN213 THR214 GLY215 LEU216 THR217 PRO218 THR219 THR220 TYR221 SER222 LEU223 ARG224 VAL225 GLY226 GLY227 LEU228 GLU229 SER230 GLY231 VAL232 VAL233 TRP234 VAL235 ASN236 ALA237 LEU238 SER239 ASN240 GLY241 ASN242 ASP243 ILE244 LEU245 GLY246 ILE247 THR248 ASN249 THR250 SER251 ASN252 VAL253 SER254 PHE255 LEU256 GLU257 VAL258 ILE259 PRO260 GLN261 THR262 ASN263
Unit 5 MSE1 GLY2 ASN3 SER4 GLY5 PHE6 TYR7 LEU8 TYR9 ASN10 THR11 GLU12 ASN13 CYS14 VAL15 PHE16 ALA17 ASP18 ASN19 ILE20 LYS21 VAL22 GLY23 GLN24 MSE25 THR26 GLU27 PRO28 LEU29 LYS30 ASP31 GLN32 GLN33 ILE34 ILE35 LEU36 GLY37 THR38 LYS39 SER40 THR41 PRO42 VAL43 ALA44 ALA45 LYS46 MSE47 THR48 ALA49 SER50 ASP51 GLY52 ILE53 SER54 LEU55 THR56 VAL57 SER58 ASN59 ASN60 SER61 ASN64 ALA65 SER66 ILE67 THR68 ILE69 GLY70 LEU71 LEU117 LYS118 ALA119 PHE120 ASN121 ASN122 PHE123 PRO124 ILE125 THR126 ASN127 LYS128 ILE129 GLN130 CYS131 ASN132 GLY133 LEU134 PHE135 THR136 PRO137 SER138 ASN139 ILE140 GLU141 THR142 LEU143 LEU144 GLY145 GLY146 THR147 GLU148 ILE149 GLY150 LYS151 PHE152 THR153 VAL154 THR155 PRO156 LYS157 SER158 SER159 GLY160 SER161 MSE162 PHE163 LEU164 VAL165 SER166 ALA167 ASP168 ILE169 ILE170 ALA171 SER172 ARG173 MSE174 GLU175 GLY176 GLY177 VAL178 VAL179 LEU180 ALA181 LEU182 VAL183 ARG184 GLU185 GLY186 ASP187 SER188 LYS189 PRO190 CYS191 ALA192 ILE193 SER194 TYR195 GLY196 TYR197 SER198 SER199 GLY200 VAL201 PRO202 ASN203 LEU204 CYS205 SER206 LEU207 ARG208 THR209 SER210 ILE211 THR212 ASN213 THR214 GLY215 LEU216 THR217 PRO218 THR219 THR220 TYR221 SER222 LEU223 ARG224 VAL225 GLY226 GLY227 LEU228 GLU229 SER230 GLY231 VAL232 VAL233 TRP234 VAL235 ASN236 ALA237 LEU238 SER239 ASN240 GLY241 ASN242 ASP243 ILE244 LEU245 GLY246 ILE247 THR248 ASN249 THR250 SER251 ASN252 VAL253 SER254 PHE255 LEU256 GLU257 VAL258 ILE259 PRO260 GLN261 THR262
Unit 6 MSE1 GLY2 ASN3 SER4 GLY5 PHE6 TYR7 LEU8 TYR9 ASN10 THR11 GLU12 ASN13 CYS14 VAL15 PHE16 ALA17 ASP18 ASN19 ILE20 LYS21 VAL22 GLY23 GLN24 MSE25 THR26 GLU27 PRO28 LEU29 LYS30 ASP31 GLN32 GLN33 ILE34 ILE35 LEU36 GLY37 THR38 LYS39 SER40 THR41 PRO42 VAL43 ALA44 ALA45 LYS46 MSE47 THR48 ALA49 SER50 ASP51 GLY52 ILE53 SER54 LEU55 THR56 VAL57 SER58 ASN59 ASN60 SER61 SER62 THR63 ASN64 ALA65 SER66 ILE67 THR68 ILE69 GLY70 LEU71 LEU117 LYS118 ALA119 PHE120 ASN121 ASN122 PHE123 PRO124 ILE125 THR126 ASN127 LYS128 ILE129 GLN130 CYS131 ASN132 GLY133 LEU134 PHE135 THR136 PRO137 SER138 ASN139 ILE140 GLU141 THR142 LEU143 LEU144 GLY145 GLY146 THR147 GLU148 ILE149 GLY150 LYS151 PHE152 THR153 VAL154 THR155 PRO156 LYS157 SER158 SER159 GLY160 SER161 MSE162 PHE163 LEU164 VAL165 SER166 ALA167 ASP168 ILE169 ILE170 ALA171 SER172 ARG173 MSE174 GLU175 GLY176 GLY177 VAL178 VAL179 LEU180 ALA181 LEU182 VAL183 ARG184 GLU185 GLY186 ASP187 SER188 LYS189 PRO190 CYS191 ALA192 ILE193 SER194 TYR195 GLY196 TYR197 SER198 SER199 GLY200 VAL201 PRO202 ASN203 LEU204 CYS205 SER206 LEU207 ARG208 THR209 SER210 ILE211 THR212 ASN213 THR214 GLY215 LEU216 THR217 PRO218 THR219 THR220 TYR221 SER222 LEU223 ARG224 VAL225 GLY226 GLY227 LEU228 GLU229 SER230 GLY231 VAL232 VAL233 TRP234 VAL235 ASN236 ALA237 LEU238 SER239 ASN240 GLY241 ASN242 ASP243 ILE244 LEU245 GLY246 ILE247 THR248 ASN249 THR250 SER251 ASN252 VAL253 SER254 PHE255 LEU256 GLU257 VAL258 ILE259 PRO260 GLN261 THR262
Unit 7 MSE1 GLY2 ASN3 SER4 GLY5 PHE6 TYR7 LEU8 TYR9 ASN10 THR11 GLU12 ASN13 CYS14 VAL15 PHE16 ALA17 ASP18 ASN19 ILE20 LYS21 VAL22 GLY23 GLN24 MSE25 THR26 GLU27 PRO28 LEU29 LYS30 ASP31 GLN32 GLN33 ILE34 ILE35 LEU36 GLY37 THR38 LYS39 SER40 THR41 PRO42 VAL43 ALA44 ALA45 LYS46 MSE47 THR48 ALA49 SER50 ASP51 GLY52 ILE53 SER54 LEU55 THR56 VAL57 SER58 ASN59 ASN60 SER61 SER62 THR63 ASN64 ALA65 SER66 ILE67 THR68 ILE69 GLY70 LEU71 LEU117 LYS118 ALA119 PHE120 ASN121 ASN122 PHE123 PRO124 ILE125 THR126 ASN127 LYS128 ILE129 GLN130 CYS131 ASN132 GLY133 LEU134 PHE135 THR136 PRO137 SER138 ASN139 ILE140 GLU141 THR142 LEU143 LEU144 GLY145 GLY146 THR147 GLU148 ILE149 GLY150 LYS151 PHE152 THR153 VAL154 THR155 PRO156 LYS157 SER158 SER159 GLY160 SER161 MSE162 PHE163 LEU164 VAL165 SER166 ALA167 ASP168 ILE169 ILE170 ALA171 SER172 ARG173 MSE174 GLU175 GLY176 GLY177 VAL178 VAL179 LEU180 ALA181 LEU182 VAL183 ARG184 GLU185 GLY186 ASP187 SER188 LYS189 PRO190 CYS191 ALA192 ILE193 SER194 TYR195 GLY196 TYR197 SER198 SER199 GLY200 VAL201 PRO202 ASN203 LEU204 CYS205 SER206 LEU207 ARG208 THR209 SER210 ILE211 THR212 ASN213 THR214 GLY215 LEU216 THR217 PRO218 THR219 THR220 TYR221 SER222 LEU223 ARG224 VAL225 GLY226 GLY227 LEU228 GLU229 SER230 GLY231 VAL232 VAL233 TRP234 VAL235 ASN236 ALA237 LEU238 SER239 ASN240 GLY241 ASN242 ASP243 ILE244 LEU245 GLY246 ILE247 THR248 ASN249 THR250 SER251 ASN252 VAL253 SER254 PHE255 LEU256 GLU257 VAL258 ILE259 PRO260 GLN261 THR262
Unit 8 MSE1 GLY2 ASN3 SER4 GLY5 PHE6 TYR7 LEU8 TYR9 ASN10 THR11 GLU12 ASN13 CYS14 VAL15 PHE16 ALA17 ASP18 ASN19 ILE20 LYS21 VAL22 GLY23 GLN24 MSE25 THR26 GLU27 PRO28 LEU29 LYS30 ASP31 GLN32 GLN33 ILE34 ILE35 LEU36 GLY37 THR38 LYS39 SER40 THR41 PRO42 VAL43 ALA44 ALA45 LYS46 MSE47 THR48 ALA49 SER50 ASP51 GLY52 ILE53 SER54 LEU55 THR56 VAL57 SER58 ASN59 ASN60 SER61 SER62 THR63 ASN64 ALA65 SER66 ILE67 THR68 ILE69 GLY70 LEU71 LEU117 LYS118 ALA119 PHE120 ASN121 ASN122 PHE123 PRO124 ILE125 THR126 ASN127 LYS128 ILE129 GLN130 CYS131 ASN132 GLY133 LEU134 PHE135 THR136 PRO137 SER138 ASN139 ILE140 GLU141 THR142 LEU143 LEU144 GLY145 GLY146 THR147 GLU148 ILE149 GLY150 LYS151 PHE152 THR153 VAL154 THR155 PRO156 LYS157 SER158 SER159 GLY160 SER161 MSE162 PHE163 LEU164 VAL165 SER166 ALA167 ASP168 ILE169 ILE170 ALA171 SER172 ARG173 MSE174 GLU175 GLY176 GLY177 VAL178 VAL179 LEU180 ALA181 LEU182 VAL183 ARG184 GLU185 GLY186 ASP187 SER188 LYS189 PRO190 CYS191 ALA192 ILE193 SER194 TYR195 GLY196 TYR197 SER198 SER199 GLY200 VAL201 PRO202 ASN203 LEU204 CYS205 SER206 LEU207 ARG208 THR209 SER210 ILE211 THR212 ASN213 THR214 GLY215 LEU216 THR217 PRO218 THR219 THR220 TYR221 SER222 LEU223 ARG224 VAL225 GLY226 GLY227 LEU228 GLU229 SER230 GLY231 VAL232 VAL233 TRP234 VAL235 ASN236 ALA237 LEU238 SER239 ASN240 GLY241 ASN242 ASP243 ILE244 LEU245 GLY246 ILE247 THR248 ASN249 THR250 SER251 ASN252 VAL253 SER254 PHE255 LEU256 GLU257 VAL258 ILE259 PRO260 GLN261
Unit 9 MSE1 GLY2 ASN3 SER4 GLY5 PHE6 TYR7 LEU8 TYR9 ASN10 THR11 GLU12 ASN13 CYS14 VAL15 PHE16 ALA17 ASP18 ASN19 ILE20 LYS21 VAL22 GLY23 GLN24 MSE25 THR26 GLU27 PRO28 LEU29 LYS30 ASP31 GLN32 GLN33 ILE34 ILE35 LEU36 GLY37 THR38 LYS39 SER40 THR41 PRO42 VAL43 ALA44 ALA45 LYS46 MSE47 THR48 ALA49 SER50 ASP51 GLY52 ILE53 SER54 LEU55 THR56 VAL57 SER58 ASN59 ASN60 SER61 SER62 THR63 ASN64 ALA65 SER66 ILE67 THR68 ILE69 GLY70 LEU71 LEU117 LYS118 ALA119 PHE120 ASN121 ASN122 PHE123 PRO124 ILE125 THR126 ASN127 LYS128 ILE129 GLN130 CYS131 ASN132 GLY133 LEU134 PHE135 THR136 PRO137 SER138 ASN139 ILE140 GLU141 THR142 LEU143 LEU144 GLY145 GLY146 THR147 GLU148 ILE149 GLY150 LYS151 PHE152 THR153 VAL154 THR155 PRO156 LYS157 SER158 SER159 GLY160 SER161 MSE162 PHE163 LEU164 VAL165 SER166 ALA167 ASP168 ILE169 ILE170 ALA171 SER172 ARG173 MSE174 GLU175 GLY176 GLY177 VAL178 VAL179 LEU180 ALA181 LEU182 VAL183 ARG184 GLU185 GLY186 ASP187 SER188 LYS189 PRO190 CYS191 ALA192 ILE193 SER194 TYR195 GLY196 TYR197 SER198 SER199 GLY200 VAL201 PRO202 ASN203 LEU204 CYS205 SER206 LEU207 ARG208 THR209 SER210 ILE211 THR212 ASN213 THR214 GLY215 LEU216 THR217 PRO218 THR219 THR220 TYR221 SER222 LEU223 ARG224 VAL225 GLY226 GLY227 LEU228 GLU229 SER230 GLY231 VAL232 VAL233 TRP234 VAL235 ASN236 ALA237 LEU238 SER239 ASN240 GLY241 ASN242 ASP243 ILE244 LEU245 GLY246 ILE247 THR248 ASN249 THR250 SER251 ASN252 VAL253 SER254 PHE255 LEU256 GLU257 VAL258 ILE259 PRO260 GLN261 THR262

Ligands
Unit 10 NA301
Unit 11 NA301
Unit 12 NA301

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany