4IN4 - JenaLib

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Title :   CRYSTAL STRUCTURE OF CPD 15 BOUND TO KEAP1 KELCH DOMAIN

Authors :   L. Silvian, D. Marcotte

Date :   03 Jan 13 (Deposition) - 15 May 13 (Release) - 03 Jul 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.59

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)

Keywords :   Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. Marcotte, W. Zeng, J. C. Hus, A. Mckenzie, C. Hession, P. Jin, C. Bergeron, A. Lugovskoy, I. Enyedy, H. Cuervo, D. Wang, C. Atmanene, D. Roecklin, M. Vecchi, V. Vivat, J. Kraemer, D. Winkler, V. Hong, J. Chao, M. Lukashev, L. Silvian
Small Molecules Inhibit The Interaction Of Nrf2 And The Keap1 Kelch Domain Through A Non-Covalent Mechanism.
Bioorg. Med. Chem. V. 21 4011 2013
PubMed-ID: 23647822 | Reference-DOI: 10.1016/J.BMC.2013.04.019

Molecule 1 - KELCH-LIKE ECH-ASSOCIATED PROTEIN 1
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28B(+)
	Expression System Strain	:	BL21 CODON PLUS(DE3)-RIL
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Fragment	:	KELCH DOMAIN RESIDUES 321-609
	Gene	:	INRF2, KEAP1, KIAA0132, KLHL19
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	CYTOSOLIC INHIBITOR OF NRF2, INRF2, KELCH-LIKE PROTEIN 19

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 14)

No.	Name	Count	Type	Full Name
1	4ID	6	Ligand/Ion	2-({5-[(2,4-DIMETHYLPHENYL)SULFONYL]-6-OXO-1,6-DIHYDROPYRIMIDIN-2-YL}SULFANYL)-N-[2-(TRIFLUOROMETHYL)PHENYL]ACETAMIDE
2	PO4	8	Ligand/Ion	PHOSPHATE ION

Biological Unit 1 (2, 6)

No.	Name	Count	Type	Full Name
1	4ID	2	Ligand/Ion	2-({5-[(2,4-DIMETHYLPHENYL)SULFONYL]-6-OXO-1,6-DIHYDROPYRIMIDIN-2-YL}SULFANYL)-N-[2-(TRIFLUOROMETHYL)PHENYL]ACETAMIDE
2	PO4	4	Ligand/Ion	PHOSPHATE ION

Biological Unit 2 (2, 5)

No.	Name	Count	Type	Full Name
1	4ID	2	Ligand/Ion	2-({5-[(2,4-DIMETHYLPHENYL)SULFONYL]-6-OXO-1,6-DIHYDROPYRIMIDIN-2-YL}SULFANYL)-N-[2-(TRIFLUOROMETHYL)PHENYL]ACETAMIDE
2	PO4	3	Ligand/Ion	PHOSPHATE ION

Biological Unit 3 (2, 3)

No.	Name	Count	Type	Full Name
1	4ID	2	Ligand/Ion	2-({5-[(2,4-DIMETHYLPHENYL)SULFONYL]-6-OXO-1,6-DIHYDROPYRIMIDIN-2-YL}SULFANYL)-N-[2-(TRIFLUOROMETHYL)PHENYL]ACETAMIDE
2	PO4	1	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (14, 14)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG A:459 , HOH A:853	BINDING SITE FOR RESIDUE PO4 A 701
02	AC2	SOFTWARE	ILE A:435 , HIS A:437 , ASN A:438 , SER A:439 , ARG A:459 , HOH A:830 , HOH A:864	BINDING SITE FOR RESIDUE PO4 A 702
03	AC3	SOFTWARE	ARG A:326 , HIS A:562 , GLN A:563	BINDING SITE FOR RESIDUE PO4 A 703
04	AC4	SOFTWARE	ARG A:380 , ARG A:415 , 4ID A:706 , ARG B:380 , ASN B:387 , PO4 B:703 , 4ID B:704	BINDING SITE FOR RESIDUE PO4 A 704
05	AC5	SOFTWARE	TYR A:334 , SER A:363 , GLY A:364 , ARG A:380 , ARG A:415 , GLY A:509 , ALA A:556 , PHE A:577 , SER A:602 , GLY A:603 , 4ID A:706 , HOH A:806 , PO4 B:703 , 4ID B:705	BINDING SITE FOR RESIDUE 4ID A 705
06	AC6	SOFTWARE	ARG A:415 , PHE A:478 , ARG A:483 , SER A:508 , TYR A:525 , GLN A:530 , SER A:555 , PO4 A:704 , 4ID A:705 , HOH A:835 , 4ID B:704 , 4ID B:705	BINDING SITE FOR RESIDUE 4ID A 706
07	AC7	SOFTWARE	ILE B:435 , HIS B:437 , ASN B:438 , SER B:439 , ARG B:459	BINDING SITE FOR RESIDUE PO4 B 701
08	AC8	SOFTWARE	ARG B:326 , HIS B:562 , GLN B:563	BINDING SITE FOR RESIDUE PO4 B 702
09	AC9	SOFTWARE	ARG A:380 , ASN A:387 , PO4 A:704 , 4ID A:705 , ARG B:380 , ARG B:415 , 4ID B:705	BINDING SITE FOR RESIDUE PO4 B 703
10	BC1	SOFTWARE	PO4 A:704 , 4ID A:706 , TYR B:334 , SER B:363 , GLY B:364 , ARG B:415 , GLY B:509 , ALA B:556 , TYR B:572 , SER B:602 , GLY B:603 , 4ID B:705	BINDING SITE FOR RESIDUE 4ID B 704
11	BC2	SOFTWARE	4ID A:705 , 4ID A:706 , HOH A:835 , ARG B:483 , SER B:508 , TYR B:525 , GLN B:530 , SER B:555 , PO4 B:703 , 4ID B:704	BINDING SITE FOR RESIDUE 4ID B 705
12	BC3	SOFTWARE	ILE C:435 , HIS C:437 , ASN C:438 , SER C:439 , ARG C:459	BINDING SITE FOR RESIDUE PO4 C 701
13	BC4	SOFTWARE	ASN B:401 , TYR C:334 , SER C:363 , GLY C:364 , ARG C:415 , GLY C:509 , ALA C:556 , PHE C:577 , SER C:602 , GLY C:603 , 4ID C:703 , HOH C:801	BINDING SITE FOR RESIDUE 4ID C 702
14	BC5	SOFTWARE	ARG B:354 , LEU B:355 , ASP B:357 , ARG C:415 , PHE C:478 , ARG C:483 , SER C:508 , TYR C:525 , GLN C:530 , SER C:555 , 4ID C:702	BINDING SITE FOR RESIDUE 4ID C 703

(no "SS Bond" information available for 4IN4)

Asymmetric Unit

No.	Residues
1	Val A:324	-	Gly A:325

(no "SAP(SNP)/Variant" information available for 4IN4)

(no "PROSITE Motif" information available for 4IN4)

(no "Exon" information available for 4IN4)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:288
                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4in4a_ A: automated matches                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeee..........eeee......eee...........eeeee..eeeee..eeee..eeee...eeeee....eeee...........eeeee..eeeee..ee..ee...eeeee....eeeee..........eeeee..eeeee...........eeeee....eeee...........eeeee..eeeee...........eeeee....eeee...........eeee....eeee..........eeeeee....eeeeeee........eeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4in4 A 322 PKVGRLIYTAGGYFRQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAVT 609
                                   331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601

Chain B from PDB  Type:PROTEIN  Length:284
                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4in4b_ B: automated matches                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..........eeee......eeee..........eeeee..eeeee..eeee..eeee...eeeee....eeeee..........eeeee..eeeee..ee..ee...eeeee....eeeee..........eeeee..eeeee...........eeeee....eeee...........eeeee..eeeee...........eeeee.....eeee..........eeeee..eeeee..........eeeeee....eeeeeee........eeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4in4 B 326 RLIYTAGGYFRQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAVT 609
                                   335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605

Chain C from PDB  Type:PROTEIN  Length:289
                                                                                                                                                                                                                                                                                                                                 
               SCOP domains d4in4c_ C: automated matches                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee..........eeee......eeee..........eeeee..eeeee..eeee..eeee...eeeee....eeeee..........eeeee..eeeee..ee..ee...eeee......eee...........eeeee..eeeeeeee....eeeeeeeee....eeeee..........eeeee..eeeee...........eeeee....eeee...........eeeee..eeeee..........eeeeee....eeeeeee........eeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4in4 C 321 APKVGRLIYTAGGYFRQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAVT 609
                                   330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: 6-bladed beta-propeller (327)

Superfamily: Kelch motif (18)

Family: Kelch motif (14)

Protein domain: automated matches (9)

Human (Homo sapiens) [TaxId: 9606] (6)

1a	d4in4a_	A:
1b	d4in4b_	B:
1c	d4in4c_	C:

(no "CATH Domain" information available for 4IN4)

(no "Pfam Domain" information available for 4IN4)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Cis Peptide Bonds
		Val A:324 - Gly A:325	[ RasMol ]

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 14)

Sites (14, 14)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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