PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
4IN4
Biol. Unit 1
Info
Asym.Unit (149 KB)
Biol.Unit 1 (50 KB)
Biol.Unit 2 (50 KB)
Biol.Unit 3 (50 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF CPD 15 BOUND TO KEAP1 KELCH DOMAIN
Authors
:
L. Silvian, D. Marcotte
Date
:
03 Jan 13 (Deposition) - 15 May 13 (Release) - 03 Jul 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.59
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Marcotte, W. Zeng, J. C. Hus, A. Mckenzie, C. Hession, P. Jin, C. Bergeron, A. Lugovskoy, I. Enyedy, H. Cuervo, D. Wang, C. Atmanene, D. Roecklin, M. Vecchi, V. Vivat, J. Kraemer, D. Winkler, V. Hong, J. Chao, M. Lukashev, L. Silvian
Small Molecules Inhibit The Interaction Of Nrf2 And The Keap1 Kelch Domain Through A Non-Covalent Mechanism.
Bioorg. Med. Chem. V. 21 4011 2013
[
close entry info
]
Hetero Components
(2, 6)
Info
All Hetero Components
1a: 2-({5-[(2,4-DIMETHYLPHENYL)SULFONY... (4IDa)
1b: 2-({5-[(2,4-DIMETHYLPHENYL)SULFONY... (4IDb)
1c: 2-({5-[(2,4-DIMETHYLPHENYL)SULFONY... (4IDc)
1d: 2-({5-[(2,4-DIMETHYLPHENYL)SULFONY... (4IDd)
1e: 2-({5-[(2,4-DIMETHYLPHENYL)SULFONY... (4IDe)
1f: 2-({5-[(2,4-DIMETHYLPHENYL)SULFONY... (4IDf)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
2c: PHOSPHATE ION (PO4c)
2d: PHOSPHATE ION (PO4d)
2e: PHOSPHATE ION (PO4e)
2f: PHOSPHATE ION (PO4f)
2g: PHOSPHATE ION (PO4g)
2h: PHOSPHATE ION (PO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
4ID
2
Ligand/Ion
2-({5-[(2,4-DIMETHYLPHENYL)SULFONYL]-6-OXO-1,6-DIHYDROPYRIMIDIN-2-YL}SULFANYL)-N-[2-(TRIFLUOROMETHYL)PHENYL]ACETAMIDE
2
PO4
4
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC9 (SOFTWARE)
8: BC1 (SOFTWARE)
9: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:459 , HOH A:853
BINDING SITE FOR RESIDUE PO4 A 701
2
AC2
SOFTWARE
ILE A:435 , HIS A:437 , ASN A:438 , SER A:439 , ARG A:459 , HOH A:830 , HOH A:864
BINDING SITE FOR RESIDUE PO4 A 702
3
AC3
SOFTWARE
ARG A:326 , HIS A:562 , GLN A:563
BINDING SITE FOR RESIDUE PO4 A 703
4
AC4
SOFTWARE
ARG A:380 , ARG A:415 , 4ID A:706 , ARG B:380 , ASN B:387 , PO4 B:703 , 4ID B:704
BINDING SITE FOR RESIDUE PO4 A 704
5
AC5
SOFTWARE
TYR A:334 , SER A:363 , GLY A:364 , ARG A:380 , ARG A:415 , GLY A:509 , ALA A:556 , PHE A:577 , SER A:602 , GLY A:603 , 4ID A:706 , HOH A:806 , PO4 B:703 , 4ID B:705
BINDING SITE FOR RESIDUE 4ID A 705
6
AC6
SOFTWARE
ARG A:415 , PHE A:478 , ARG A:483 , SER A:508 , TYR A:525 , GLN A:530 , SER A:555 , PO4 A:704 , 4ID A:705 , HOH A:835 , 4ID B:704 , 4ID B:705
BINDING SITE FOR RESIDUE 4ID A 706
7
AC9
SOFTWARE
ARG A:380 , ASN A:387 , PO4 A:704 , 4ID A:705 , ARG B:380 , ARG B:415 , 4ID B:705
BINDING SITE FOR RESIDUE PO4 B 703
8
BC1
SOFTWARE
PO4 A:704 , 4ID A:706 , TYR B:334 , SER B:363 , GLY B:364 , ARG B:415 , GLY B:509 , ALA B:556 , TYR B:572 , SER B:602 , GLY B:603 , 4ID B:705
BINDING SITE FOR RESIDUE 4ID B 704
9
BC2
SOFTWARE
4ID A:705 , 4ID A:706 , HOH A:835 , ARG B:483 , SER B:508 , TYR B:525 , GLN B:530 , SER B:555 , PO4 B:703 , 4ID B:704
BINDING SITE FOR RESIDUE 4ID B 705
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d4in4a_ (A:)
1b: SCOP_d4in4b_ (B:)
1c: SCOP_d4in4c_ (C:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Kelch motif
(18)
Family
:
Kelch motif
(14)
Protein domain
:
automated matches
(9)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d4in4a_
A:
1b
d4in4b_
B:
1c
d4in4c_
C:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (149 KB)
Header - Asym.Unit
Biol.Unit 1 (50 KB)
Header - Biol.Unit 1
Biol.Unit 2 (50 KB)
Header - Biol.Unit 2
Biol.Unit 3 (50 KB)
Header - Biol.Unit 3
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4IN4
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
