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(-) Description

Title :  THE PENTAMERIC LIGAND-GATED ION CHANNEL GLIC A237F IN COMPLEX WITH BROMIDE
 
Authors :  L. Sauguet, P. J. Corringer, M. Delarue
Date :  29 Dec 12  (Deposition) - 20 Feb 13  (Release) - 20 Mar 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.83
Chains :  Asym./Biol. Unit :  A,B,C,D,E
Keywords :  Pentameric Ligand-Gated Ion Channel, Ion Channel, Membrane, Membrane Protein, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Sauguet, F. Poitevin, S. Murail, C. Van Renterghem, G. Moraga-Cid L. Malherbe, A. W. Thompson, P. Koehl, P. J. Corringer, M. Baaden, M. Delarue
Structural Basis For Ion Permeation Mechanism In Pentameric Ligand-Gated Ion Channels.
Embo J. V. 32 728 2013
PubMed-ID: 23403925  |  Reference-DOI: 10.1038/EMBOJ.2013.17

(-) Compounds

Molecule 1 - PROTON-GATED ION CHANNEL
    Chains: A, B, C, D, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 C43
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 44-358
    Gene: GLVI, GLR4197
    Mutation: YES
    Organism Scientific: GLOEOBACTER VIOLACEUS
    Organism Taxid: 251221
    Strain: PCC 7421
    Synonym: GLIC, LIGAND-GATED ION CHANNEL, LGIC

 Structural Features

(-) Chains, Units

  12345
Asymmetric/Biological Unit : ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 54)

Asymmetric/Biological Unit (6, 54)
No.NameCountTypeFull Name
1ACT10Ligand/IonACETATE ION
2BR12Ligand/IonBROMIDE ION
3LMT6Ligand/IonDODECYL-BETA-D-MALTOSIDE
4NA6Ligand/IonSODIUM ION
5PLC10Ligand/IonDIUNDECYL PHOSPHATIDYL CHOLINE
6UNL10Ligand/IonUNKNOWN LIGAND

(-) Sites  (43, 43)

Asymmetric Unit (43, 43)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:77 , ILE A:131 , GLU A:181 , PHE E:42 , ARG E:105BINDING SITE FOR RESIDUE ACT A 401
02AC2SOFTWAREPRO A:74 , ARG A:85 , TYR A:102 , HOH A:509BINDING SITE FOR RESIDUE ACT A 402
03AC3SOFTWAREARG A:118 , PHE A:121 , TYR A:194 , TYR A:254 , ASN A:307 , PHE A:315 , PLC A:404BINDING SITE FOR RESIDUE PLC A 403
04AC4SOFTWAREPLC A:403BINDING SITE FOR RESIDUE PLC A 404
05AC5SOFTWAREPHE A:78 , ARG A:85BINDING SITE FOR RESIDUE BR A 407
06AC6SOFTWAREASN A:139 , LEU A:180 , ALA D:175BINDING SITE FOR RESIDUE BR A 408
07AC7SOFTWARETYR A:221 , GLU A:222 , LYS A:280BINDING SITE FOR RESIDUE BR A 409
08AC8SOFTWAREPHE A:237 , ILE A:240 , THR B:244BINDING SITE FOR RESIDUE LMT A 410
09AC9SOFTWAREPRO A:68 , ILE A:71 , ILE A:73BINDING SITE FOR RESIDUE NA A 412
10BC1SOFTWAREPHE A:42 , ARG A:105 , ARG B:77 , ILE B:131 , GLU B:181BINDING SITE FOR RESIDUE ACT B 401
11BC2SOFTWAREPRO B:74 , ILE B:76 , ARG B:85BINDING SITE FOR RESIDUE ACT B 402
12BC3SOFTWAREARG B:118 , PHE B:121 , TYR B:194 , TYR B:254 , ASN B:307 , PHE B:315 , PLC B:404BINDING SITE FOR RESIDUE PLC B 403
13BC4SOFTWAREPLC B:403BINDING SITE FOR RESIDUE PLC B 404
14BC5SOFTWAREPHE B:78 , ARG B:85BINDING SITE FOR RESIDUE BR B 407
15BC6SOFTWARETHR B:219 , TYR B:221 , GLU B:222 , LYS B:280BINDING SITE FOR RESIDUE BR B 408
16BC7SOFTWAREPHE B:237BINDING SITE FOR RESIDUE LMT B 409
17BC8SOFTWAREPRO B:68 , ILE B:71 , TRP B:72 , ILE B:73BINDING SITE FOR RESIDUE NA B 410
18BC9SOFTWAREPHE B:42 , ARG B:105 , ARG C:77 , ILE C:131 , GLU C:181BINDING SITE FOR RESIDUE ACT C 401
19CC1SOFTWAREPRO C:74 , GLU C:75 , ILE C:76 , ARG C:85BINDING SITE FOR RESIDUE ACT C 402
20CC2SOFTWAREARG C:118 , PHE C:121 , TYR C:194 , TYR C:254 , ASN C:307 , PHE C:315 , PLC C:404BINDING SITE FOR RESIDUE PLC C 403
21CC3SOFTWAREPLC C:403BINDING SITE FOR RESIDUE PLC C 404
22CC4SOFTWAREPHE C:78 , ARG C:85BINDING SITE FOR RESIDUE BR C 407
23CC5SOFTWARETYR C:221 , GLU C:222BINDING SITE FOR RESIDUE BR C 408
24CC6SOFTWAREPHE C:237 , LMT C:410BINDING SITE FOR RESIDUE LMT C 409
25CC7SOFTWAREPHE B:237 , PHE C:237 , LMT C:409 , PHE D:237 , PHE E:237 , LMT E:409BINDING SITE FOR RESIDUE LMT C 410
26CC8SOFTWAREPRO C:68 , ILE C:71BINDING SITE FOR RESIDUE NA C 411
27CC9SOFTWAREPHE C:42 , ARG C:105 , ARG D:77 , ILE D:131 , GLU D:181BINDING SITE FOR RESIDUE ACT D 401
28DC1SOFTWAREILE D:73 , PRO D:74 , ILE D:76 , ARG D:85BINDING SITE FOR RESIDUE ACT D 402
29DC2SOFTWAREARG D:118 , PHE D:121 , TYR D:194 , TYR D:254 , ASN D:307 , PHE D:315 , PLC D:404BINDING SITE FOR RESIDUE PLC D 403
30DC3SOFTWAREPLC D:403BINDING SITE FOR RESIDUE PLC D 404
31DC4SOFTWAREPHE D:78 , ARG D:85BINDING SITE FOR RESIDUE BR D 407
32DC5SOFTWAREALA A:175 , ASN D:139 , LEU D:180BINDING SITE FOR RESIDUE BR D 408
33DC6SOFTWARETHR D:219 , TYR D:221 , GLU D:222BINDING SITE FOR RESIDUE BR D 409
34DC7SOFTWAREPHE D:237BINDING SITE FOR RESIDUE LMT D 410
35DC8SOFTWAREVAL D:5 , PRO D:68 , ILE D:71 , ILE D:73BINDING SITE FOR RESIDUE NA D 411
36DC9SOFTWAREPHE D:42 , ARG D:105 , ARG E:77 , ILE E:131 , GLU E:181BINDING SITE FOR RESIDUE ACT E 401
37EC1SOFTWAREPRO E:74 , GLU E:75 , ILE E:76 , ARG E:85BINDING SITE FOR RESIDUE ACT E 402
38EC2SOFTWAREARG E:118 , PHE E:121 , TYR E:194 , TYR E:254 , ASN E:307 , PHE E:315 , PLC E:404BINDING SITE FOR RESIDUE PLC E 403
39EC3SOFTWAREPLC E:403BINDING SITE FOR RESIDUE PLC E 404
40EC4SOFTWAREPHE E:78 , ARG E:85BINDING SITE FOR RESIDUE BR E 407
41EC5SOFTWARETYR E:221 , GLU E:222BINDING SITE FOR RESIDUE BR E 408
42EC6SOFTWARELMT C:410 , PHE E:237 , ILE E:240BINDING SITE FOR RESIDUE LMT E 409
43EC7SOFTWAREPRO E:68 , ILE E:71 , ILE E:73BINDING SITE FOR RESIDUE NA E 410

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IL9)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1Tyr A:119 -Pro A:120
2Tyr B:119 -Pro B:120
3Tyr C:119 -Pro C:120
4Tyr D:119 -Pro D:120
5Tyr E:119 -Pro E:120

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IL9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IL9)

(-) Exons   (0, 0)

(no "Exon" information available for 4IL9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:311
                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh.hhhhhh...ee.hhhhh....eee.......eeeeeeeee....eeeeeeeeeeeee...........eeeeeeeeeee......eeeee.hhhhee........eeeeeeeeeeeeeeeee..eeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4il9 A   5 VSPPPPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENARDADVVDISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFWSTSYEANVTLVVSTLIAHIFFNILVETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQPARAASITRASRIAFPVVFLLANIILAFLFF 315
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314 


Chain B from PDB  Type:PROTEIN  Length:311
                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh.hhhhhh...ee.hhhhh....eee.......eeeeeeeee....eeeeeeeeeeeee...........eeeeeeeeeee......eeeee.hhhhee........eeeeeeeeeeeeeeee....eeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4il9 B   5 VSPPPPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENARDADVVDISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFWSTSYEANVTLVVSTLIAHIFFNILVETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQPARAASITRASRIAFPVVFLLANIILAFLFF 315
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314 


Chain C from PDB  Type:PROTEIN  Length:311
                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh.hhhhhh...ee.hhhhh....eee.......eeeeeeeee....eeeeeeeeeeeee...........eeeeeeeeeee......eeeee.hhhhee........eeeeeeeeeeeeeeeee..eeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4il9 C   5 VSPPPPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENARDADVVDISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFWSTSYEANVTLVVSTLIAHIFFNILVETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQPARAASITRASRIAFPVVFLLANIILAFLFF 315
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314 


Chain D from PDB  Type:PROTEIN  Length:311
                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh.hhhhhh...ee.hhhhh....eee.......eeeeeeeee....eeeeeeeeeeeee...........eeeeeeeeeee......eeeee.hhhhee........eeeeeeeeeeeeeeee....eeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4il9 D   5 VSPPPPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENARDADVVDISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFWSTSYEANVTLVVSTLIAHIFFNILVETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQPARAASITRASRIAFPVVFLLANIILAFLFF 315
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314 


Chain E from PDB  Type:PROTEIN  Length:311
                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh.hhhhhh...ee.hhhhh....eee.......eeeeeeeee....eeeeeeeeeeeee...........eeeeeeeeeee......eeeee.hhhhee........eeeeeeeeeeeeeeee....eeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4il9 E   5 VSPPPPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENARDADVVDISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFWSTSYEANVTLVVSTLIAHIFFNILVETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQPARAASITRASRIAFPVVFLLANIILAFLFF 315
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4IL9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IL9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IL9)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GLIC_GLOVI | Q7NDN8: 2xq3 2xq4 2xq5 2xq6 2xq7 2xq8 2xq9 2xqa 3eam 3ehz 3ei0 3igq 3lsv 3p4w 3p50 3tls 3tlt 3tlu 3tlv 3tlw 3uu3 3uu4 3uu5 3uu6 3uu8 3uub 4f8h 4hfb 4hfc 4hfd 4hfe 4hfh 4hfi 4il4 4ila 4ilb 4ilc 4ire 4lmj 4lmk 4lml 4npp 4npq 4qh1 4qh4 4qh5 4x5t 4yeu 4zzb 4zzc 5hcj 5hcm 5heg 5heh 5iux 5j0z 5l47 5l4e 5l4h

(-) Related Entries Specified in the PDB File

4hfi 4il4 4ila 4ilb 4ilc