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(-) Description

Title :  CRYSTAL STRUCTURE OF THE DELTA-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE FROM MYCOBACTERIUM TUBERCULOSIS BOUND WITH NAD
 
Authors :  T. Lagautriere, G. Bashiri, E. N. Baker
Date :  18 Dec 12  (Deposition) - 18 Dec 13  (Release) - 12 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  A  (6x)
Biol. Unit 3:  A  (2x)
Keywords :  Rossmann Fold, Pyrroline-5-Carboxylate Dehtdrogenase, Pyrroline-5- Carboxylic Acid, Dehydrogenation, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Lagautriere, G. Bashiri, N. G. Paterson, M. Berney, G. M. Cook, E. N. Baker
Characterization Of The Proline-Utilization Pathway In Mycobacterium Tuberculosis Through Structural And Functiona Studies.
Acta Crystallogr. , Sect. D V. 70 968 2014
PubMed-ID: 24699642  |  Reference-DOI: 10.1107/S1399004713034391

(-) Compounds

Molecule 1 - DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE
    Chains: A
    EC Number: 1.5.1.12
    Engineered: YES
    Expression System: MYCOBACTERIUM SMEGMATIS
    Expression System Strain: MC2 4517
    Expression System Taxid: 1772
    Gene: MT1224, PRUA, ROCA, RV1187
    Mutation: YES
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 83332
    Strain: H37RV
    Synonym: PROBABLE PYRROLINE-5-CARBOXYLATE DEHYDROGENASE ROCA

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A
Biological Unit 2 (6x): A
Biological Unit 3 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1NAD1Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1NAD2Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1NAD6Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1NAD2Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:184 , ILE A:186 , THR A:187 , PRO A:188 , PHE A:189 , ASN A:190 , ILE A:194 , LYS A:212 , SER A:214 , ASP A:244 , GLY A:245 , SER A:249 , THR A:264 , GLY A:265 , SER A:266 , THR A:269 , GLU A:293 , THR A:294 , GLY A:295 , CYS A:327 , PHE A:427 , LEU A:456 , HOH A:755 , HOH A:920 , HOH A:929 , HOH A:947 , HOH A:949 , HOH A:988 , HOH A:1039 , HOH A:1070 , HOH A:1071BINDING SITE FOR RESIDUE NAD A 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IHI)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4IHI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:535
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................hhhhhhhhhhhhhhhhh.eee.eee..eee.....eeeeee..eeeeeeeeee..hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh........eeeeeeee....eeeee....hhhhhhhhhhhhhhh...eeee.hhhhhhhhhhhhhhhhhh......eee....hhhhhhhhh....eeeeeee.hhhhhhhhhhhhhhhhhhh....eeeee....eeeee....hhhhhhhhhhhhhhhhhhh....eeeeeeehhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhh..eeeee...ee.....ee..eeeee........eeeeeeehhhhhhhhhhhhhhhh....eeeee..hhhhhhhhhhhh.....eeee...........................hhhhhhh..eeeeeeee........hhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ihi A   1 MDAITQVPVPANEPVHDYAPKSPERTRLRTELASLADHPIDLPHVIGGRHRMGDGERIDVVQPHRHAARLGTLTNATHADAAAAVEAAMSAKSDWAALPFDERAAVFLRAADLLAGPWREKIAAATMLGQSKSVYQAEIDAVCELIDFWRFNVAFARQILEQQPISGPGEWNRIDYRPLDGFVYAITPFNFTSIAGNLPTAPALMGNTVIWKPSITQTLAAYLTMQLLEAAGLPPGVINLVTGDGFAVSDVALADPRLAGIHFTGSTATFGHLWQWVGTNIGRYHSYPRLVGETGGKDFVVAHASARPDVLRTALIRGAFDYQGQKCSAVSRAFIAHSVWQRMGDELLAKAAELRYGDITDLSNYGGALIDQRAFVKNVDAIERAKGAAAVTVAVGGEYDDSEGYFVRPTVLLSDDPEYFGPLLSVHVYPDERYEQILDVIDTGSRYALTGAVIADDRQAVLTALDRLRFAAGNFYVNDKPTGAVVGRQPFGGARGSDTNDKAGSPLNLLRWTSARSIKETFVAATDHIYPHMAV 542
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4IHI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IHI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IHI)

(-) Gene Ontology  (10, 10)

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 Related Entries

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UniProtKB/TrEMBL
        O50443_MYCTU | O50443: 4idm 4ids 4jdc 4lem 4ns3

(-) Related Entries Specified in the PDB File

4idm NATIVE STRUCTURE (SMALL UNIT CELL)
4ids NATIVE STRUCTURE (LARGE UNIT CELL)