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(-) Description

Title :  CRYSTAL STRUCTURE OF THE DELTA-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE FROM MYCOBACTERIUM TUBERCULOSIS
 
Authors :  T. Lagautriere, G. Bashiri, E. N. Baker
Date :  12 Dec 12  (Deposition) - 18 Dec 13  (Release) - 16 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  A  (6x)
Biol. Unit 3:  A  (2x)
Keywords :  Pyrroline Dehydrogenase, Aldehyde Dehydrogenase, Pyrroline-5- Carboxylate Dehydrogeanse, Pyrroline-5-Carboxylic Acid, Dehydrogenation, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Lagautriere, G. Bashiri, N. G. Paterson, M. Berney, G. M. Cook, E. N. Baker
Characterization Of The Proline-Utilization Pathway In Mycobacterium Tuberculosis Through Structural And Functiona Studies.
Acta Crystallogr. , Sect. D V. 70 968 2014
PubMed-ID: 24699642  |  Reference-DOI: 10.1107/S1399004713034391

(-) Compounds

Molecule 1 - DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE
    Chains: A
    EC Number: 1.5.1.12
    Engineered: YES
    Expression System: MYCOBACTERIUM SMEGMATIS
    Expression System Strain: MC2 4517
    Expression System Taxid: 1772
    Gene: RV1187
    Mutation: YES
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 83332
    Strain: H37RV

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A
Biological Unit 2 (6x): A
Biological Unit 3 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 16)
No.NameCountTypeFull Name
1MSE16Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 48)
No.NameCountTypeFull Name
1MSE48Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 16)
No.NameCountTypeFull Name
1MSE16Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4IDM)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IDM)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Val A:542 -Asp A:543

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IDM)

(-) PROSITE Motifs  (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:536
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......................hhhhhhhhhhhhhhhhh.eee.eee..eee.....eeeeee..eeeeeeeeee..hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh........eeeeeeee....eeeee....hhhhhhhhhhhhhhh...eeee.hhhhhhhhhhhhhhhhhh......eee....hhhhhhhhh....eeeeeeeehhhhhhhhhhhhhhhhhhh....eeeeee..eeeeee....hhhhhhhhhhhhhhhhhhh....eeeeeeehhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhh..eeeee...ee.....ee..eeeee........eeeeeeehhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhh.....eeee..........................hhhhhhh..eeeeeeee........hhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4idm A   0 HmDAITQVPVPANEPVHDYAPKSPERTRLRTELASLADHPIDLPHVIGGRHRmGDGERIDVVQPHRHAARLGTLTNATHADAAAAVEAAmSAKSDWAALPFDERAAVFLRAADLLAGPWREKIAAATmLGQSKSVYQAEIDAVCELIDFWRFNVAFARQILEQQPISGPGEWNRIDYRPLDGFVYAITPFNFTSIAGNLPTAPALmGNTVIWKPSITQTLAAYLTmQLLEAAGLPPGVINLVTGDGFAVSDVALADPRLAGIHFTGSTATFGHLWQWVGTNIGRYHSYPRLVGETGGKDFVVAHASARPDVLRTALIRGAFDYQGQKCSAVSRAFIAHSVWQRmGDELLAKAAELRYGDITDLSNYGGALIDQRAFVKNVDAIERAKGAAAVTVAVGGEYDDSEGYFVRPTVLLSDDPTYFGPLLSVHVYPDERYEQILDVIDTGSRYALTGAVIADDRQAVLTALDRLRFAAGNFYVNDKPTAVVGRQPFGGARGSDTNDKAGSPLNLLRWTSARSIKETFVAATDHIYPHmAVD 543
                             |       9        19        29        39        49  |     59        69        79        89        99       109       119       129       139       149       159       169       179       189       199     | 209       219     | 229       239       249       259       269       279       289       299       309       319       329       339   |   349       359       369       379       389       399       409       426       436       446       456       466       476       486  ||   497       507       517       527       537  |   
                             |                                                 52-MSE                               89-MSE                               127-MSE                                                                       205-MSE             225-MSE                                                                                                               343-MSE                                                                    418|                                                            489|                                              540-MSE
                             1-MSE                                                                                                                                                                                                                                                                                                                                                                                                                           426                                                             491
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4IDM)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (10, 10)

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        O50443_MYCTU | O50443: 4ids 4ihi 4jdc 4lem 4ns3

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4ids