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(-) Description

Title :  CRYSTAL STRUCTURE OF THE DELTA-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE FROM MYCOBACTERIUM TUBERCULOSIS
 
Authors :  T. Lagautriere, G. Bashiri, E. N. Baker
Date :  13 Dec 12  (Deposition) - 18 Dec 13  (Release) - 16 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.04
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  A  (6x)
Biol. Unit 3:  A  (2x)
Keywords :  Prua, Delta-Pyrroline-5-Carboxylic Dehydrogenase, Aldehyde Dehydrogenase, Pyrroline-5-Carboxylate Dehydrogenase, Pyrroline-5- Carboxylate, Dehydrogenation, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Lagautriere, G. Bashiri, N. G. Paterson, M. Berney, G. M. Cook, E. N. Baker
Characterization Of The Proline-Utilization Pathway In Mycobacterium Tuberculosis Through Structural And Functiona Studies.
Acta Crystallogr. , Sect. D V. 70 968 2014
PubMed-ID: 24699642  |  Reference-DOI: 10.1107/S1399004713034391

(-) Compounds

Molecule 1 - DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE
    Chains: A
    EC Number: 1.5.1.12
    Engineered: YES
    Expression System: MYCOBACTERIUM SMEGMATIS
    Expression System Strain: MC2 4517
    Expression System Taxid: 1772
    Gene: RV1187
    Mutation: YES
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 83332
    Strain: H37RV

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A
Biological Unit 2 (6x): A
Biological Unit 3 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1CME1Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1CME2Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1CME6Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1CME2Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric Unit
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:541
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......................hhhhhhhhhhhhhhhhh.eee.eee..eee.....eeeeee..eeeeeeeeee..hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh........eeeeeeeee...eeeee....hhhhhhhhhhhhhhh...eeee.hhhhhhhhhhhhhhhhhh......eee....hhhhhhhhhhh..eeeeeee........hhhhhhhhhh....eeeee..eeeeeee....hhhhhhhhhhhhhhhhhhh..eeeeeeeeehhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhh..eeeee...ee.....ee..eeeee....hhhhhh.....eeeeeeehhhhhhhhhhhhhhh.....eeeee..hhhhhhhhhhhh.....eeee...........................hhhhhhhheeeeeeeee........hhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ids A   0 HMDAITQVPVPANEPVHDYAPKSPERTRLRTELASLADHPIDLPHVIGGRHRMGDGERIDVVQPHRHAARLGTLTNATHADAAAAVEAAMSAKSDWAALPFDERAAVFLRAADLLAGPWREKIAAATMLGQSKSVYQAEIDAVCELIDFWRFNVAFARQILEQQPISGPGEWNRIDYRPLDGFVYAITPFNFTSIAGNLPTAPALMGNTVIWKPSITQTLAAYLTMQLLEAAGLPPGVINLVTGDGFAVSDVALADPRLAGIHFTGSTATFGWQWVGTNIGRYHSYPRLVGETGGKDFVVAHASARPDVLRTALIRGAFDYQGQKcSAVSRAFIAHSVWQRMGDELLAKAAELRYGDITDLSNYGGALIDQRAFVKNVDAIERAKGAAAVTVAVGGEYDDSEGYFVRPTVLLSDDPTDESFVIEYFGPLLSVHVYPDERYEQILDVIDTGSRYALTGAVIADDRQAVLTALDRLRFAAGNFYVNDKPTGAVVGRQPFGGARGSDTNDKAGSPLNLLRWTSARSIKETFVAATDHIYPHMAV 542
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269 ||    281       291       301       311       321     | 331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541 
                                                                                                                                                                                                                                                                                                         271|                                                  327-CME                                                                                                                                                                                                                   
                                                                                                                                                                                                                                                                                                          274
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

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        O50443_MYCTU | O50443: 4idm 4ihi 4jdc 4lem 4ns3

(-) Related Entries Specified in the PDB File

4idm