4HOE - JenaLib

Title :   CANDIDA ALBICANS DIHYDROFOLATE REDUCTASE COMPLEXED WITH NADPH AND 5-[3-(2,5-DIMETHOXY-4-PHENYLPHENYL)BUT-1-YN-1-YL]-6-METHYLPYRIMIDINE-2, 4-DIAMINE (UCP111E)

Authors :   J. L. Paulsen, A. C. Anderson

Date :   22 Oct 12 (Deposition) - 19 Mar 14 (Release) - 09 Apr 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.76

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Antifungal Agents, Candida Albicans, Drug Design, Enzyme Inhibitors, Fungal Proteins, Structure-Activity Relationship, Tetrahydrofolate Dehydrogenase, Oxidoreductase-Oxidoreductase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. G-Dayanandan, J. L. Paulsen, K. Viswanathan, S. Keshipeddy, M. N. Lombardo, W. Zhou, K. M. Lamb, A. E. Sochia, J. B. Alverson, N. D. Priestley, D. L. Wright, A. C. Anderson
Propargyl-Linked Antifolates Are Dual Inhibitors Of Candida Albicans And Candida Glabrata.
J. Med. Chem. V. 57 2643 2014
PubMed-ID: 24568657 | Reference-DOI: 10.1021/JM401916J

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 7)

Asymmetric Unit (4, 7)

No.	Name	Count	Type	Full Name
1	18G	2	Ligand/Ion	5-[3-(2,5-DIMETHOXY-4-PHENYLPHENYL)BUT-1-YN-1-YL]-6-METHYLPYRIMIDINE-2,4-DIAMINE
2	GLY	1	Mod. Amino Acid	GLYCINE
3	GOL	2	Ligand/Ion	GLYCEROL
4	NDP	2	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE

Biological Unit 1 (4, 4)

No.	Name	Count	Type	Full Name
1	18G	1	Ligand/Ion	5-[3-(2,5-DIMETHOXY-4-PHENYLPHENYL)BUT-1-YN-1-YL]-6-METHYLPYRIMIDINE-2,4-DIAMINE
2	GLY	1	Mod. Amino Acid	GLYCINE
3	GOL	1	Ligand/Ion	GLYCEROL
4	NDP	1	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE

Biological Unit 2 (3, 3)

No.	Name	Count	Type	Full Name
1	18G	1	Ligand/Ion	5-[3-(2,5-DIMETHOXY-4-PHENYLPHENYL)BUT-1-YN-1-YL]-6-METHYLPYRIMIDINE-2,4-DIAMINE
2	GLY	-1	Mod. Amino Acid	GLYCINE
3	GOL	1	Ligand/Ion	GLYCEROL
4	NDP	1	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE

Sites (7, 7)

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	VAL A:10 , ALA A:11 , ILE A:19 , GLY A:20 , GLY A:23 , LYS A:24 , MET A:25 , LYS A:31 , GLY A:55 , ARG A:56 , LYS A:57 , THR A:58 , LEU A:77 , SER A:78 , ARG A:79 , SER A:94 , ILE A:112 , GLY A:114 , ALA A:115 , GLU A:116 , ILE A:117 , TYR A:118 , GLU A:120 , GLU A:174 , 18G A:202 , HOH A:341 , HOH A:347 , HOH A:354 , HOH A:381 , HOH A:397 , HOH A:424 , HOH A:441 , HOH A:444	BINDING SITE FOR RESIDUE NDP A 201
2	AC2	SOFTWARE	ILE A:9 , VAL A:10 , ALA A:11 , MET A:25 , GLU A:32 , PHE A:36 , THR A:58 , SER A:61 , PRO A:63 , PHE A:66 , ILE A:112 , TYR A:118 , NDP A:201 , HOH A:340	BINDING SITE FOR RESIDUE 18G A 202
3	AC3	SOFTWARE	ASN A:5 , ARG A:108 , VAL A:109 , SER A:128 , HIS A:129 , PHE A:167	BINDING SITE FOR RESIDUE GLY A 203
4	AC4	SOFTWARE	SER A:94 , SER A:95 , SER A:98 , VAL A:172 , HOH A:317 , HOH A:336 , HOH A:351 , HOH A:387	BINDING SITE FOR RESIDUE GOL A 204
5	AC5	SOFTWARE	VAL B:10 , ALA B:11 , ILE B:19 , GLY B:20 , GLY B:23 , LYS B:24 , MET B:25 , GLY B:55 , ARG B:56 , LYS B:57 , THR B:58 , LEU B:77 , SER B:78 , ARG B:79 , SER B:94 , SER B:95 , ILE B:96 , ILE B:112 , GLY B:114 , ALA B:115 , GLU B:116 , ILE B:117 , TYR B:118 , GLU B:120 , 18G B:202 , HOH B:327 , HOH B:348 , HOH B:358 , HOH B:373 , HOH B:387 , HOH B:397 , HOH B:409 , HOH B:452	BINDING SITE FOR RESIDUE NDP B 201
6	AC6	SOFTWARE	ILE B:9 , VAL B:10 , ALA B:11 , GLU B:32 , PHE B:36 , THR B:58 , SER B:61 , PRO B:63 , ILE B:112 , TYR B:118 , NDP B:201	BINDING SITE FOR RESIDUE 18G B 202
7	AC7	SOFTWARE	LYS A:3 , ASP B:105 , HOH B:308 , HOH B:337 , HOH B:462 , HOH B:469	BINDING SITE FOR RESIDUE GOL B 203

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:192
                                                                                                                                                                                                                                
               SCOP domains d4hoea_ A: Dihydrofolate reductases, eukaryotic type                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeeeee....eee........hhhhhhhhhhhhhh......eeeeeeehhhhh............eeeee......eeee..eeee.hhhhhhhh...eeeeeeeehhhhhhhhh....eeeeeeeeee..hhhhh...ee...hhh.eee.hhhhhhhhhh.......eee..eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4hoe A   1 MLKPNVAIIVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESIPQKFRPLPDRLNIILSRSYENEIIDDNIIHASSIESSLNLVSDVERVFIIGGAEIYNELINNSLVSHLLITEIEHPSPESIEMDTFLKFPLESWTKQPKSELQKFVGDTVLEDDIKEGDFTYNYTLWTRK 192
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190

Chain B from PDB  Type:PROTEIN  Length:192
                                                                                                                                                                                                                                
               SCOP domains d4hoeb_ B: Dihydrofolate reductases, eukaryotic type                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeeeee....eee........hhhhhhhhhhhhhh........eeeeehhhhh............eeeee......eeee..eeee.hhhhhh.......eeee..hhhhhhhhh....eeeeeeeeee..hhhhh...ee...hhh.eee.hhhhhhhhhh.......eee..eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4hoe B   1 MLKPNVAIIVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESIPQKFRPLPDRLNIILSRSYENEIIDDNIIHASSIESSLNLVSDVERVFIIGGAEIYNELINNSLVSHLLITEIEHPSPESIEMDTFLKFPLESWTKQPKSELQKFVGDTVLEDDIKEGDFTYNYTLWTRK 192
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (8, 8)

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		Arg A:67 - Pro A:68	[ RasMol ]
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		Gly A:113 - Gly A:114	[ RasMol ]
		Gly B:113 - Gly B:114	[ RasMol ]
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	4hoe
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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

3qlr	CANDIDA ALBICANS DIHYDROFOLATE REDUCTASE COMPLEXED WITH NADPH AND 6-METHYL-5-[(3R)-3-(3,4,5-TRIMETHOXYPHENYL)PENT- 1-YN-1-YL]PYRIMIDINE-2,4-DIAMINE (UCP112A)
3qls	CANDIDA ALBICANS DIHYDROFOLATE REDUCTASE COMPLEXED WITH NADPH AND 6-METHYL-5-[3-METHYL-3-(3,4,5-TRIMETHOXYPHENYL) BUT-1-YN-1-YL]PYRIMIDINE-2,4-DIAMINE (UCP115A)
3qlw	CANDIDA ALBICANS DIHYDROFOLATE REDUCTASE COMPLEXED WITH NADPH AND 5-[3-(2,5-DIMETHOXYPHENYL)PROP-1-YN-1-YL]-6- ETHYLPYRIMIDINE-2,4-DIAMINE (UCP120B)
4h95	CANDIDA ALBICANS DIHYDROFOLATE REDUCTASE COMPLEXED WITH NADPH AND 6-ETHYL-5-{3-[3-METHOXY-5-(PYRIDIN-4-YL)PHENYL] BUT-1-YN-1-YL}PYRIMIDINE-2,4-DIAMINE (UCP1006)
4h96	CANDIDA ALBICANS DIHYDROFOLATE REDUCTASE COMPLEXED WITH NADPH AND 5-{3-[3-(2,3-DIHYDRO-1,4-BENZODIOXIN-6-YL)-5- METHOXYPHENYL]PROP-1-YN-1-YL}-6-ETHYLPYRIMIDINE-2,4-DIAMINE (UCP1018)
4h97	CANDIDA ALBICANS DIHYDROFOLATE REDUCTASE COMPLEXED WITH NADPH AND 5-{3-[3-METHOXY-5-(4-METHYLPHENYL)PHENYL]BUT-1-YN -1-YL}-6-METHYLPYRIMIDINE-2,4-DIAMINE (UCP111D4M)
4h98	CANDIDA GLABRATA DIHYDROFOLATE REDUCTASE COMPLEXED WITH NADPH AND 5-{3-[3-(2,3-DIHYDRO-1,4-BENZODIOXIN-6-YL)-5- METHOXYPHENYL]PROP-1-YN-1-YL}-6-ETHYLPYRIMIDINE-2,4-DIAMINE (UCP1018)
4hof	CANDIDA ALBICANS DIHYDROFOLATE REDUCTASE COMPLEXED WITH NADPH AND 5-[3-(2-METHOXY-4-PHENYLPHENYL)BUT-1-YN-1-YL]-6- METHYLPYRIMIDINE-2,4-DIAMINE
4hog	CANDIDA GLABRATA DIHYDROFOLATE REDUCTASE COMPLEXED WITH NADPH AND 5-[3-(2-METHOXY-4-PHENYLPHENYL)BUT-1-YN-1-YL]-6- METHYLPYRIMIDINE-2,4-DIAMINE (UCP111H)

Description