4H97 - JenaLib

Title :   CANDIDA ALBICANS DIHYDROFOLATE REDUCTASE COMPLEXED WITH NADPH AND 5-{3-[3-METHOXY-5-(4-METHYLPHENYL)PHENYL]BUT-1-YN-1-YL}-6-METHYLPYRIMIDINE-2,4-DIAMINE (UCP111D4M)

Authors :   J. L. Paulsen, A. C. Anderson

Date :   24 Sep 12 (Deposition) - 27 Mar 13 (Release) - 20 Nov 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Antifungal Agents, Candida Albicans, Drug Design, Enzyme Inhibitors, Fungal Proteins, Tetrahydrofolate Dehydrogenase, Oxidoreductase- Oxidoreductase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. L. Paulsen, K. Viswanathan, D. L. Wright, A. C. Anderson
Structural Analysis Of The Active Sites Of Dihydrofolate Reductase From Two Species Of Candida Uncovers Ligand-Induced Conformational Changes Shared Among Species.
Bioorg. Med. Chem. Lett. V. 23 1279 2013
PubMed-ID: 23375226 | Reference-DOI: 10.1016/J.BMCL.2013.01.008

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 5)

Sites (5, 5)

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	VAL A:10 , ALA A:11 , ILE A:19 , GLY A:20 , GLY A:23 , LYS A:24 , MET A:25 , GLY A:55 , ARG A:56 , LYS A:57 , THR A:58 , LEU A:77 , SER A:78 , ARG A:79 , SER A:94 , ILE A:112 , GLY A:113 , GLY A:114 , ALA A:115 , GLU A:116 , ILE A:117 , TYR A:118 , 53S A:202	BINDING SITE FOR RESIDUE NDP A 201
2	AC2	SOFTWARE	ILE A:9 , VAL A:10 , ALA A:11 , GLU A:32 , ILE A:33 , PHE A:36 , THR A:58 , PRO A:63 , ILE A:112 , TYR A:118 , NDP A:201	BINDING SITE FOR RESIDUE 53S A 202
3	AC3	SOFTWARE	VAL B:10 , ALA B:11 , ILE B:19 , GLY B:23 , LYS B:24 , MET B:25 , ARG B:30 , GLY B:55 , ARG B:56 , LYS B:57 , THR B:58 , LEU B:77 , SER B:78 , ARG B:79 , SER B:94 , ILE B:112 , GLY B:114 , ALA B:115 , GLU B:116 , ILE B:117 , TYR B:118 , GLU B:120 , 53S B:202 , HOH B:302	BINDING SITE FOR RESIDUE NDP B 201
4	AC4	SOFTWARE	ILE B:9 , VAL B:10 , GLU B:32 , ILE B:33 , PHE B:36 , THR B:58 , SER B:61 , PRO B:63 , PHE B:66 , ILE B:112 , TYR B:118 , NDP B:201	BINDING SITE FOR RESIDUE 53S B 202
5	AC5	SOFTWARE	ILE A:85 , ARG B:28	BINDING SITE FOR RESIDUE GOL B 203

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:190
                                                                                                                                                                                                                              
               SCOP domains d4h97a_ A: Dihydrofolate reductases, eukaryotic type                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee....eee........hhhhhhhhhhhhhh......eeeeeeehhhhh..hhhhh....eeeeee......ee....eeee.hhhhhhh....eeeeee..hhhhhhh......eeeeeeeeee..hhhhh...ee...hhh.eee.hhhhhhhhhh.......eee..eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h97 A   3 KPNVAIIVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESIPQKFRPLPDRLNIILSRSYENEIIDDNIIHASSIESSLNLVSDVERVFIIGGAEIYNELINNSLVSHLLITEIEHPSPESIEMDTFLKFPLESWTKQPKSELQKFVGDTVLEDDIKEGDFTYNYTLWTRK 192
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192

Chain B from PDB  Type:PROTEIN  Length:190
                                                                                                                                                                                                                              
               SCOP domains d4h97b_ B: Dihydrofolate reductases, eukaryotic type                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee....eee........hhhhhhhhhhhhhh......eeeeeeehhhhh..hhhhh....eeeeee......ee....eeee.hhhhhhhhh..eeeeeeeehhhhhhhhh......eeeeeeee..hhhhh...ee...hhh.eeeehhhhhhhhhh.......eee..eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h97 B   3 KPNVAIIVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESIPQKFRPLPDRLNIILSRSYENEIIDDNIIHASSIESSLNLVSDVERVFIIGGAEIYNELINNSLVSHLLITEIEHPSPESIEMDTFLKFPLESWTKQPKSELQKFVGDTVLEDDIKEGDFTYNYTLWTRK 192
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (9, 14)

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	Ligands, Modified Residues, Ions
		53S	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
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	Sites
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		AC4	[ RasMol ]	+environment [ RasMol ]
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	Cis Peptide Bonds
		Arg A:67 - Pro A:68	[ RasMol ]
		Arg B:67 - Pro B:68	[ RasMol ]
		Gly A:113 - Gly A:114	[ RasMol ]
		Gly B:113 - Gly B:114	[ RasMol ]
		Lys A:14 - Pro A:15	[ RasMol ]
		Lys B:14 - Pro B:15	[ RasMol ]

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Description