1IA4 - JenaLib

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Title :   CANDIDA ALBICANS DIHYDROFOLATE REDUCTASE COMPLEX IN WHICH THE DIHYDRONICOTINAMIDE MOIETY OF DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE (NADPH) IS DISPLACED BY 5-{[4-(4-MORPHOLINYL)PHENYL]SULFANYL}-2,4-QUINAZOLINEDIAMIN (GW2021)

Authors :   M. Whitlow, A. J. Howard, L. F. Kuyper

Date :   22 Mar 01 (Deposition) - 11 Apr 01 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.85

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Oxidoreductase, Antifungal Target, Reductase, Dihydronicotinamide Displaced (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Whitlow, A. J. Howard, D. Stewart, K. D. Hardman, J. H. Chan, D. P. Baccanari, R. L. Tansik, J. S. Hong, L. F. Kuyper
X-Ray Crystal Structures Of Candida Albicans Dihydrofolate Reductase: High Resolution Ternary Complexes In Which The Dihydronicotinamide Moiety Of Nadph Is Displaced By An Inhibitor
J. Med. Chem. V. 44 2928 2001
PubMed-ID: 11520201 | Reference-DOI: 10.1021/JM0101444
(for further references see the PDB file header)

Molecule 1 - DIHYDROFOLATE REDUCTASE
	Chains	:	A, B
	EC Number	:	1.5.1.3
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	P1869
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	DFR1
	Organism Scientific	:	CANDIDA ALBICANS
	Organism Taxid	:	5476

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 6)

No.	Name	Count	Type	Full Name
1	MES	2	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2	NDP	2	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
3	TQ6	2	Ligand/Ion	5-(4-MORPHOLIN-4-YL-PHENYLSULFANYL)-2,4-QUINAZOLINEDIAMINE

Biological Unit 1 (3, 3)

No.	Name	Count	Type	Full Name
1	MES	1	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2	NDP	1	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
3	TQ6	1	Ligand/Ion	5-(4-MORPHOLIN-4-YL-PHENYLSULFANYL)-2,4-QUINAZOLINEDIAMINE

Biological Unit 2 (3, 3)

No.	Name	Count	Type	Full Name
1	MES	1	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2	NDP	1	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
3	TQ6	1	Ligand/Ion	5-(4-MORPHOLIN-4-YL-PHENYLSULFANYL)-2,4-QUINAZOLINEDIAMINE

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:30 , LYS A:31 , GLY A:55 , ARG A:56 , LYS A:57 , THR A:58 , LEU A:77 , SER A:78 , ARG A:79 , SER A:94 , GLY A:114 , ALA A:115 , GLU A:116 , ILE A:117 , GLU A:120 , TQ6 A:194 , HOH A:352 , HOH A:395 , HOH A:423 , HOH A:461 , HOH A:492	BINDING SITE FOR RESIDUE NDP A 193
2	AC2	SOFTWARE	ILE A:9 , VAL A:10 , GLY A:23 , GLU A:32 , ILE A:33 , PHE A:36 , ILE A:112 , ALA A:115 , TYR A:118 , THR A:133 , NDP A:193	BINDING SITE FOR RESIDUE TQ6 A 194
3	AC3	SOFTWARE	GLY B:23 , GLY B:55 , ARG B:56 , LYS B:57 , THR B:58 , LEU B:77 , SER B:78 , ARG B:79 , SER B:94 , SER B:95 , ILE B:96 , GLY B:114 , ALA B:115 , GLU B:116 , ILE B:117 , GLU B:120 , THR B:147 , TQ6 B:196 , HOH B:322 , HOH B:350 , HOH B:389 , HOH B:481 , HOH B:490	BINDING SITE FOR RESIDUE NDP B 195
4	AC4	SOFTWARE	ILE B:9 , VAL B:10 , GLY B:23 , MET B:25 , GLU B:32 , PHE B:36 , THR B:58 , ILE B:112 , TYR B:118 , THR B:133 , NDP B:195 , MES B:202	BINDING SITE FOR RESIDUE TQ6 B 196
5	AC5	SOFTWARE	PHE A:36 , LYS A:37 , ARG A:72 , HOH A:363	BINDING SITE FOR RESIDUE MES A 201
6	AC6	SOFTWARE	PHE B:36 , LYS B:37 , LEU B:69 , ARG B:72 , TQ6 B:196	BINDING SITE FOR RESIDUE MES B 202

(no "SS Bond" information available for 1IA4)

Asymmetric Unit

No.	Residues
1	Lys A:14	-	Pro A:15
2	Arg A:67	-	Pro A:68
3	Gly A:113	-	Gly A:114
4	Lys B:14	-	Pro B:15
5	Arg B:67	-	Pro B:68
6	Gly B:113	-	Gly B:114

Asymmetric Unit (2, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_DYR_CANAX_001 *	S	2	L	DYR_CANAX	---	---	A/B	L	2	L
2	UniProt	VAR_DYR_CANAX_002 *	K	84	E	DYR_CANAX	---	---	A/B	E	84	E
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_DYR_CANAX_001 *	S	2	L	DYR_CANAX	---	---	A	L	2	L
2	UniProt	VAR_DYR_CANAX_002 *	K	84	E	DYR_CANAX	---	---	A	E	84	E
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_DYR_CANAX_001 *	S	2	L	DYR_CANAX	---	---	B	L	2	L
2	UniProt	VAR_DYR_CANAX_002 *	K	84	E	DYR_CANAX	---	---	B	E	84	E
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	DHFR_2	PS51330	Dihydrofolate reductase (DHFR) domain profile.	DYR_CANAX	5-191	2	A:5-191 B:5-191
2	DHFR_1	PS00075	Dihydrofolate reductase (DHFR) domain signature.	DYR_CANAX	18-40	2	A:18-40 B:18-40

Biological Unit 1 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	DHFR_2	PS51330	Dihydrofolate reductase (DHFR) domain profile.	DYR_CANAX	5-191	1	A:5-191 -
2	DHFR_1	PS00075	Dihydrofolate reductase (DHFR) domain signature.	DYR_CANAX	18-40	1	A:18-40 -

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	DHFR_2	PS51330	Dihydrofolate reductase (DHFR) domain profile.	DYR_CANAX	5-191	1	- B:5-191
2	DHFR_1	PS00075	Dihydrofolate reductase (DHFR) domain signature.	DYR_CANAX	18-40	1	- B:18-40

(no "Exon" information available for 1IA4)

Asymmetric Unit

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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:192
 aligned with DYR_CANAX | P22906 from UniProtKB/Swiss-Prot  Length:192

    Alignment length:192
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190  
            DYR_CANAX     1 MSKPNVAIIVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESIPQKFRPLPDRLNIILSRSYENKIIDDNIIHASSIESSLNLVSDVERVFIIGGAEIYNELINNSLVSHLLITEIEHPSPESIEMDTFLKFPLESWTKQPKSELQKFVGDTVLEDDIKEGDFTYNYTLWTRK 192
               SCOP domains d1ia4a_ A: Dihydrofolate reductases, eukaryotic type                                                                                                                                             SCOP domains
               CATH domains 1ia4A00 A:1-192 Dihydrofolate Reductase, subunit A                                                                                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeeeee....eee........hhhhhhhhhhhhhh......eeeeeeehhhhhhhhhhhh.....eeeee......eeee..eeee.hhhhhhh....eeeeeeeehhhhhhhhh....eeeeeeeeee..hhhhh...ee...hhh.eee.hhhhhhhhhh.......eee..eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -L---------------------------------------------------------------------------------E------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) ----DHFR_2  PDB: A:5-191 UniProt: 5-191                                                                                                                                                        - PROSITE (1)
                PROSITE (2) -----------------DHFR_1  PDB: A:18-40   -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ia4 A   1 MLKPNVAIIVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESIPQKFRPLPDRLNIILSRSYENEIIDDNIIHASSIESSLNLVSDVERVFIIGGAEIYNELINNSLVSHLLITEIEHPSPESIEMDTFLKFPLESWTKQPKSELQKFVGDTVLEDDIKEGDFTYNYTLWTRK 192
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190

Chain B from PDB  Type:PROTEIN  Length:192
 aligned with DYR_CANAX | P22906 from UniProtKB/Swiss-Prot  Length:192

    Alignment length:192
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190  
            DYR_CANAX     1 MSKPNVAIIVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESIPQKFRPLPDRLNIILSRSYENKIIDDNIIHASSIESSLNLVSDVERVFIIGGAEIYNELINNSLVSHLLITEIEHPSPESIEMDTFLKFPLESWTKQPKSELQKFVGDTVLEDDIKEGDFTYNYTLWTRK 192
               SCOP domains d1ia4b_ B: Dihydrofolate reductases, eukaryotic type                                                                                                                                             SCOP domains
               CATH domains 1ia4B00 B:1-192 Dihydrofolate Reductase, subunit A                                                                                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeeeee....eee........hhhhhhhhhhhhhh.......eeeeeehhhhhhhhhhhh....eeeeee......eeee..eeee.hhhhhh........eeeeehhhhhhhhh....eeeeeeeeee..hhhhh...ee...hhh.eee.hhhhhhhhhh.......eee..eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -L---------------------------------------------------------------------------------E------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) ----DHFR_2  PDB: B:5-191 UniProt: 5-191                                                                                                                                                        - PROSITE (1)
                PROSITE (2) -----------------DHFR_1  PDB: B:18-40   -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ia4 B   1 MLKPNVAIIVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESIPQKFRPLPDRLNIILSRSYENEIIDDNIIHASSIESSLNLVSDVERVFIIGGAEIYNELINNSLVSHLLITEIEHPSPESIEMDTFLKFPLESWTKQPKSELQKFVGDTVLEDDIKEGDFTYNYTLWTRK 192
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

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Class: Alpha and beta proteins (a/b) (23833)

Fold: Dihydrofolate reductase-like (332)

Superfamily: Dihydrofolate reductase-like (332)

Family: Dihydrofolate reductases (249)

Protein domain: Dihydrofolate reductases, eukaryotic type (120)

Yeast (Candida albicans) [TaxId: 5476] (17)

1a	d1ia4a_	A:
1b	d1ia4b_	B:

Asymmetric Unit

Classes(

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Architectures( (-)

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Topologies( (-)

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Homologous Superfamilies( (-)

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Organisms( (-)

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Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Dihydrofolate Reductase, subunit A (200)

Homologous Superfamily: Dihydrofolate Reductase, subunit A (200)

Candida albicans. Organism_taxid: 5476. (7)

1a	1ia4A00	A:1-192
1b	1ia4B00	B:1-192

(no "Pfam Domain" information available for 1IA4)

Asymmetric Unit(hide GO term definitions)

Chain A,B (DYR_CANAX | P22906)

molecular function
	GO:0050661	NADP binding	Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
	GO:0004146	dihydrofolate reductase activity	Catalysis of the reaction: 5,6,7,8-tetrahydrofolate + NADP+ = 7,8-dihydrofolate + NADPH + H+.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0006545	glycine biosynthetic process	The chemical reactions and pathways resulting in the formation of glycine, aminoethanoic acid.
	GO:0009165	nucleotide biosynthetic process	The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates).
	GO:0006730	one-carbon metabolic process	The chemical reactions and pathways involving the transfer of one-carbon units in various oxidation states.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0046654	tetrahydrofolate biosynthetic process	The chemical reactions and pathways resulting in the formation of tetrahydrofolate, 5,6,7,8-tetrahydrofolic acid, a folate derivative bearing additional hydrogens on the pterin group.

Asymmetric Unit
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	Cis Peptide Bonds
		Arg A:67 - Pro A:68	[ RasMol ]
		Arg B:67 - Pro B:68	[ RasMol ]
		Gly A:113 - Gly A:114	[ RasMol ]
		Gly B:113 - Gly B:114	[ RasMol ]
		Lys A:14 - Pro A:15	[ RasMol ]
		Lys B:14 - Pro B:15	[ RasMol ]

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	1ia4
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1ai9	BINARY COMPLEX OF CANDIDA ALBICANS DIHYDROFOLATE REDUCTASE (DHFR) WITH DIHYDRO-NICOTINAMIDE-ADENINE- DINUCLEOTIDEPHOSPHATE (NADPH)
1aoe	CANDIDA ALBICANS DIHYDROFOLATE REDUCTASE COMPLEXED WITH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE (NADPH) AND 1,3-DIAMINO-7-(1-ETHYEPROPYE)-7H-PYRRALO-{3,2-F] QUINAZOLINE (GW345)
1ia1	CANDIDA ALBICANS DIHYDROFOLATE REDUCTASE COMPLEXED WITH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE (NADPH) AND 5-[PHENYLSULFANYL]-2,4-QUINAZOLINEDIAMINE (GW997)
1ia2	CANDIDA ALBICANS DIHYDROFOLATE REDUCTASE COMPLEXED WITH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE (NADPH) AND 5-[(4-METHYLPHENYL)SULFANYL]-2,4-QUINAZOLINEDIAMINE (GW578)
1ia3	CANDIDA ALBICANS DIHYDROFOLATE REDUCTASE COMPLEXED IN WHICH THE DIHYDRONICOTINAMIDE MOIETY OF DIHYDRO-NICOTINAMIDE- ADENINE-DINUCLEOTIDE PHOSPHATE (NADPH) IS DISPLACED BY 5- [(4-TERT-BUTYLPHENYL)SULFANYL]-2,4-QUINAZOLINEDIAMINE (GW995)

Description

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Ligands, Modified Residues, Ions (3, 6)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

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SAPs(SNPs)/Variants (2, 4)

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Exons (0, 0)

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