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(-) Description

Title :  CRYSTAL STRUCTURE OF DYP-TYPE PEROXIDASE (SCO7193) FROM STREPTOMYCES COELICOLOR
 
Authors :  T. Lukk, A. M. A. Hetta, A. Jones, J. Solbiati, S. Majumdar, J. E. Cronan, J. A. Gerlt, S. K. Nair
Date :  29 Aug 12  (Deposition) - 11 Sep 13  (Release) - 11 Sep 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,C  (1x)
Keywords :  Ferridoxin-Like, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Lukk, A. M. A. Hetta, A. Jones, J. Solbiati, S. Majumdar, J. E. Cronan J. A. Gerlt, S. K. Nair
Dyp-Type Peroxidases From Stretptomyces And Thermobifida Ca Modify Organosolv Lignin.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN SCO7193
    Chains: A, B, C, D
    EC Number: 1.11.1.19
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: SCO7193
    Organism Scientific: STREPTOMYCES COELICOLOR
    Organism Taxid: 100226
    Strain: ATCC BAA-471 / A3(2) / M145
    Synonym: DYP-TYPE PEROXIDASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A  D
Biological Unit 2 (1x):  BC 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric Unit (2, 5)
No.NameCountTypeFull Name
1HEM4Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
2NI1Ligand/IonNICKEL (II) ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1HEM2Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
2NI-1Ligand/IonNICKEL (II) ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1HEM2Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
2NI-1Ligand/IonNICKEL (II) ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:146 , VAL A:151 , ASP A:152 , GLY A:153 , THR A:154 , GLU A:155 , GLN A:184 , TYR A:186 , HIS A:188 , ARG A:207 , HIS A:225 , VAL A:226 , THR A:229 , SER A:230 , ARG A:243 , ASN A:245 , PHE A:260 , MET A:273 , ILE A:289 , SER A:293BINDING SITE FOR RESIDUE HEM A 401
2AC2SOFTWAREASP B:146 , VAL B:151 , ASP B:152 , GLY B:153 , THR B:154 , GLU B:155 , GLN B:184 , TYR B:186 , HIS B:188 , ARG B:207 , HIS B:225 , THR B:229 , SER B:230 , ARG B:243 , ASN B:245 , PHE B:260 , MET B:273 , MET B:277 , ILE B:289BINDING SITE FOR RESIDUE HEM B 401
3AC3SOFTWAREASP C:146 , PHE C:150 , VAL C:151 , ASP C:152 , GLY C:153 , THR C:154 , GLU C:155 , GLN C:184 , TYR C:186 , HIS C:188 , ARG C:207 , HIS C:225 , THR C:229 , ARG C:243 , ASN C:245 , THR C:258 , PHE C:260 , MET C:273 , ILE C:289 , SER C:293BINDING SITE FOR RESIDUE HEM C 401
4AC4SOFTWAREASP D:146 , PHE D:150 , VAL D:151 , GLY D:153 , THR D:154 , GLU D:155 , GLN D:184 , TYR D:186 , HIS D:188 , ARG D:207 , HIS D:225 , THR D:229 , SER D:230 , ARG D:243 , ASN D:245 , THR D:258 , PHE D:260 , MET D:273BINDING SITE FOR RESIDUE HEM D 401
5AC5SOFTWAREGLU B:268 , HIS D:286 , ASP D:291BINDING SITE FOR RESIDUE NI D 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GU7)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Gln A:55 -Pro A:56
2Gln B:55 -Pro B:56
3Gln C:55 -Pro C:56
4Gln D:55 -Pro D:56

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GU7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GU7)

(-) Exons   (0, 0)

(no "Exon" information available for 4GU7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:310
                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains d4gu7a_ A: automated matches                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeeehhhhhhhh.............ee....ee......eeeeeee.hhhhhhhhhhhhhhhhh..eeeeeeeeee..................hhhhhhhhhh....hhhhh..eeeeeeeeeehhhhhhh.hhhhhhhhhh.................hhhhhh.ee.....ee..ee..eeeee....eeeeeeeeee.hhhhhhhhhhhhhhh......hhhhh.eee...eeeee.hhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gu7 A   7 EPEPQMVLSPLTSAAIFLVVTIDSGGEDTVRDLLSDVASLERAVGFRAQPDGRLSCVTGIGSEAWDRLFSGARPAGLHPFRELDGPVHRAVATPGDLLFHIRASRLDLCFALATEIMGRLRGAVTPQDEVHGFKYFDERDMLGFVDGTENPTGAAARRAVLVGAEDPAFAGGSYAVVQKYLHDIDAWEGLSVEAQERVIGRRKMTDVELSDDVKPADSHVALTSVTGPDGSDLEILRDNMPFGSVGREEFGTYFIGYARTPEVTETMLERMFLGTASAPHDRILDFSTAVTGSLFFTPAADFLEDLPARP 316
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316


Chain B from PDB  Type:PROTEIN  Length:310
                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains d4gu7b_ B: automated matches                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeeee...hhhhhhhhhhhhhhhhhhhhh........eeeeeehhhhhhhhh.............ee....ee......eeeeeee.hhhhhhhhhhhhhhhhh..eeeeeeeeee..................hhhhhhhhhh....hhhhh..eeeeeeeeeehhhhhhh.hhhhhhhhhh.................hhhhhh.ee.....ee..ee..eeeee....eeeeeeeeee.hhhhhhhhhhhhhh.......hhhhh.eee...eeeee.hhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gu7 B   7 EPEPQMVLSPLTSAAIFLVVTIDSGGEDTVRDLLSDVASLERAVGFRAQPDGRLSCVTGIGSEAWDRLFSGARPAGLHPFRELDGPVHRAVATPGDLLFHIRASRLDLCFALATEIMGRLRGAVTPQDEVHGFKYFDERDMLGFVDGTENPTGAAARRAVLVGAEDPAFAGGSYAVVQKYLHDIDAWEGLSVEAQERVIGRRKMTDVELSDDVKPADSHVALTSVTGPDGSDLEILRDNMPFGSVGREEFGTYFIGYARTPEVTETMLERMFLGTASAPHDRILDFSTAVTGSLFFTPAADFLEDLPARP 316
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316


Chain C from PDB  Type:PROTEIN  Length:310
                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains d4gu7c_ C: automated matches                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeeee...hhhhhhhhhhhhhhhhhhhhh........eeeeeehhhhhhhhh.............ee....ee......eeeeeee.hhhhhhhhhhhhhhhhh..eeeeeeeeee..................hhhhhhhhhh....hhhhh..eeeeeeeeeehhhhhhh.hhhhhhhhhh.................hhhhhh.ee.....ee..ee..eeeee....eeeeeeeeee.hhhhhhhhhhhhhh.......hhhhh.eee...eeeee.hhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gu7 C   7 EPEPQMVLSPLTSAAIFLVVTIDSGGEDTVRDLLSDVASLERAVGFRAQPDGRLSCVTGIGSEAWDRLFSGARPAGLHPFRELDGPVHRAVATPGDLLFHIRASRLDLCFALATEIMGRLRGAVTPQDEVHGFKYFDERDMLGFVDGTENPTGAAARRAVLVGAEDPAFAGGSYAVVQKYLHDIDAWEGLSVEAQERVIGRRKMTDVELSDDVKPADSHVALTSVTGPDGSDLEILRDNMPFGSVGREEFGTYFIGYARTPEVTETMLERMFLGTASAPHDRILDFSTAVTGSLFFTPAADFLEDLPARP 316
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316


Chain D from PDB  Type:PROTEIN  Length:310
                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains d4gu7d_ D: automated matches                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeeee...hhhhhhhhhhhhhhhhhhhhh........eeeeeeehhhhhhhh.............ee....ee......eeeeeee.hhhhhhhhhhhhhhhhh..eeeeeeeeee..................hhhhhhhhhh....hhhhh..eeeeeeeeeehhhhhh..hhhhhhhhhh.................hhhhhh.ee.....ee..ee..eeeee....eeeeeeeeee.hhhhhhhhhhhhhh.......hhhhh.eeeeeeeeeee.hhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gu7 D   7 EPEPQMVLSPLTSAAIFLVVTIDSGGEDTVRDLLSDVASLERAVGFRAQPDGRLSCVTGIGSEAWDRLFSGARPAGLHPFRELDGPVHRAVATPGDLLFHIRASRLDLCFALATEIMGRLRGAVTPQDEVHGFKYFDERDMLGFVDGTENPTGAAARRAVLVGAEDPAFAGGSYAVVQKYLHDIDAWEGLSVEAQERVIGRRKMTDVELSDDVKPADSHVALTSVTGPDGSDLEILRDNMPFGSVGREEFGTYFIGYARTPEVTETMLERMFLGTASAPHDRILDFSTAVTGSLFFTPAADFLEDLPARP 316
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GU7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GU7)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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(-) Related Entries Specified in the PDB File

4grc 4gs1 4gt2