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(-) Description

Title :  CRYSTAL STRUCTURE OF DYP-TYPE PEROXIDASE (SCO2276) FROM STREPTOMYCES COELICOLOR
 
Authors :  T. Lukk, A. M. A. Hetta, A. Jones, J. Solbiati, S. Majumdar, J. E. Cronan, J. A. Gerlt, S. K. Nair
Date :  24 Aug 12  (Deposition) - 04 Sep 13  (Release) - 04 Sep 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Ferridoxin-Like, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Lukk, A. M. A. Hetta, A. Jones, J. Solbiati, S. Majumdar, J. E. Cronan J. A. Gerlt, S. K. Nair
Dyp-Type Peroxidases From Stretptomyces And Thermobifida Ca Modify Organosolv Lignin.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE MEMBRANE PROTEIN
    Chains: A
    EC Number: 1.11.1.19
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: SCO2276
    Organism Scientific: STREPTOMYCES COELICOLOR
    Organism Taxid: 100226
    Strain: ATCC BAA-471 / A3(2) / M145
    Synonym: DYP-TYPE PEROXIDASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric Unit (3, 3)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
2HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
3PEO1Ligand/IonHYDROGEN PEROXIDE
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2HEM2Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
3PEO2Ligand/IonHYDROGEN PEROXIDE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:616 , HOH A:661 , HOH A:680 , HOH A:697 , HOH A:759 , HOH A:813 , HOH A:837BINDING SITE FOR RESIDUE CA A 501
2AC2SOFTWAREASN A:233 , LYS A:238 , ASP A:239 , GLY A:240 , THR A:241 , ARG A:242 , PHE A:297 , HIS A:326 , VAL A:327 , ALA A:330 , HIS A:331 , PRO A:332 , ARG A:342 , LEU A:361 , PHE A:363 , PHE A:374 , GLN A:378 , LEU A:386 , PEO A:503 , HOH A:603 , HOH A:618BINDING SITE FOR RESIDUE HEM A 502
3AC3SOFTWAREASP A:239 , ARG A:342 , LEU A:361 , HEM A:502 , HOH A:663BINDING SITE FOR RESIDUE PEO A 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GRC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4GRC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GRC)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4GRC)

(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:357
                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................eeeeeeeee...hhhhhhhhhhhhhhhhhhhhh...............................eeeeee.hhhhhh..hhhhh...............hhhhh...eeeeeee.hhhhhhhhhhhhhhhh...eeeeeeeee.ee...........................hhhhhhhhh..hhhhhhhhhh..eeeeeeeeeehhhhhh..hhhhhhhhhh..................hhhhh...hhhhhhhhhhh.....ee..eeee.....eeeeeeeee.hhhhhhhhhhhhhhhhhhhh.eeeeeeeeeee...........hhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4grc A  56 SAVPFHGAHQAGIATPVQDRLHFAAFDVTTEDRAAFVALLKEWTAAARRLTAGHAVGEGAYGGLPEAPPDDTGEALGLKPSRLTLTIGFGPSLFTRFGLADLRPEALADLPKFPGDNLDRARSGGDLCVQACADDPQVAVHAIRNLARIGFGKVVVRWSQLGFGKTSSTTPDEQTPRNLLGFKDGTRNIAGTEKDRLDRFVWAAEKDGTPWMTGGSYLVARRIRMHIETWDRASLQEQEDVFGRDKGEGAPVGKAKERDEPFLKAMKPDAHVRLAHPDSNGGATLLRRGYSFTDGTDDAGLFFLAYQRDIRTGFVPVQRNLATDALNEYIQHVGSAVFAVPPGVRDADDWWGSTLFG 417
                                    65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345      |360       370       380       390       400       410       
                                                                                                                                                                                                                                                                                                                                  352|                                                           
                                                                                                                                                                                                                                                                                                                                   358
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4GRC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GRC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GRC)

(-) Gene Ontology  (8, 8)

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(-) Related Entries Specified in the PDB File

4gs1 4gt2 4gu7