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Title :   CRYSTAL STRUCTURE OF GLMU FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE AND PYROPHOSPHATE SNAPSHOT 2

Authors :   P. A. Jagtap, S. K. Verma, B. Prakash

Date :   15 Jul 12 (Deposition) - 07 Aug 13 (Release) - 07 Aug 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.04

Chains :   Asym. Unit : A
Biol. Unit 1: A  (3x)

Keywords :   Acetyltransferase, Bifunctional, Pyrophosphorylase, Rossmann-Like Fold, Left-Handed-Beta-Helix, Cell Shape, Cell Wall Biogenesis/Degradation, Metal-Binding, Multifunctional Enzyme, Nucleotidyltransferase, Peptidoglycan Synthesis, Transferase, Acyltransferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. A. Jagtap, S. K. Verma, B. Prakash
Structural Snapshots Of Glmu From Mycobacterium Tuberculosi
To Be Published
PubMed: search

Molecule 1 - BIFUNCTIONAL PROTEIN GLMU
	Chains	:	A
	EC Number	:	2.7.7.23, 2.3.1.157
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PQEII
	Expression System Strain	:	DH5ALPHA
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	GLMU, MT1046, RV1018C
	Organism Scientific	:	MYCOBACTERIUM TUBERCULOSIS
	Organism Taxid	:	1773
	Strain	:	H37RV
	Synonym	:	UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE, N- ACETYLGLUCOSAMINE-1-PHOSPHATE URIDYLTRANSFERASE, GLUCOSAMINE-1- PHOSPHATE N-ACETYLTRANSFERASE

		1
Asymmetric Unit	:	A
Biological Unit 1 (3x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 7)

No.	Name	Count	Type	Full Name
1	CO	2	Ligand/Ion	COBALT (II) ION
2	GN1	1	Ligand/Ion	2-(ACETYLAMINO)-2-DEOXY-1-O-PHOSPHONO-ALPHA-D-GLUCOPYRANOSE
3	MG	2	Ligand/Ion	MAGNESIUM ION
4	POP	1	Ligand/Ion	PYROPHOSPHATE 2-
5	UD1	1	Ligand/Ion	URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE

Biological Unit 1 (3, 9)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION
2	GN1	3	Ligand/Ion	2-(ACETYLAMINO)-2-DEOXY-1-O-PHOSPHONO-ALPHA-D-GLUCOPYRANOSE
3	MG	-1	Ligand/Ion	MAGNESIUM ION
4	POP	3	Ligand/Ion	PYROPHOSPHATE 2-
5	UD1	3	Ligand/Ion	URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LEU A:12 , ALA A:13 , ALA A:14 , GLY A:15 , ARG A:19 , LYS A:26 , GLN A:83 , PRO A:86 , LEU A:87 , GLY A:88 , THR A:89 , ALA A:92 , ASP A:114 , TYR A:150 , GLY A:151 , GLU A:166 , ASN A:181 , TYR A:209 , THR A:211 , ASN A:239 , POP A:503 , MG A:505 , CO A:506 , HOH A:640 , HOH A:676 , HOH A:685 , HOH A:693 , HOH A:958 , HOH A:959 , HOH A:963 , HOH A:970 , HOH A:971	BINDING SITE FOR RESIDUE UD1 A 501
2	AC2	SOFTWARE	ARG A:344 , LYS A:362 , PRO A:373 , HIS A:374 , TYR A:377 , ASN A:388 , VAL A:394 , ASN A:397 , HOH A:751 , HOH A:813 , HOH A:833 , HOH A:962 , HOH A:968	BINDING SITE FOR RESIDUE GN1 A 502
3	AC3	SOFTWARE	GLY A:15 , PRO A:16 , GLY A:17 , THR A:18 , ARG A:19 , LYS A:26 , UD1 A:501 , MG A:505 , HOH A:604 , HOH A:829 , HOH A:957 , HOH A:963 , HOH A:969 , HOH A:970	BINDING SITE FOR RESIDUE POP A 503
4	AC4	SOFTWARE	ASP A:417 , CO A:507 , HOH A:606	BINDING SITE FOR RESIDUE MG A 504
5	AC5	SOFTWARE	ARG A:19 , UD1 A:501 , POP A:503 , HOH A:782 , HOH A:969 , HOH A:970 , HOH A:971	BINDING SITE FOR RESIDUE MG A 505
6	AC6	SOFTWARE	ASP A:114 , ASN A:239 , UD1 A:501 , HOH A:958 , HOH A:959	BINDING SITE FOR RESIDUE CO A 506
7	AC7	SOFTWARE	ASP A:417 , MG A:504 , HOH A:924	BINDING SITE FOR RESIDUE CO A 507

(no "SS Bond" information available for 4G3S)

Asymmetric Unit

No.	Residues
1	Gly A:305	-	Pro A:306
2	Gly A:338	-	Pro A:339
3	Ala A:422	-	Pro A:423

(no "SAP(SNP)/Variant" information available for 4G3S)

(no "PROSITE Motif" information available for 4G3S)

(no "Exon" information available for 4G3S)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:462
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains d4g3sa1 A:6-263 automated matches                                                                                                                                                                                                                                 d4g3sa2 A:264-474 automated matches                                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee....hhhhh...hhhh.ee..eehhhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhh........eeeeee......hhhhhhhhhhhhhhh...eeeeeee........eeee.....eeeeehhhhh..hhhhh.eeeeeeeeehhhhhhhhhh...........hhhhhhhhhhhh...eeeee..hhhhhh...hhhhhhhhhhhhhhhhhhhhhhh..ee.hhh.eee....ee....ee...eeee...ee....ee....eeeeeee....ee..eeeeeeee....ee...eee...eee....eeee.eeee..ee....eeee..eee.eee....ee....eee..eee....ee....eee...ee....ee....ee........ee..........hhhhhhh..hhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4g3s A   6 DTAVLVLAAGPGTRMRSDTPKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPLVGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADLIATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVYAFDIAALRSALSRLSSNNAQQELYLTDVIAILRSDGQTVHASHVDDSALVAGVNNRVQLAELASELNRRVVAAHQLAGVTVVDPATTWIDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGTALGADGKLGAFVEVKNSTIGTGTKVPHLTYVGDADIGEYSNIGASSVFVNRTTVGSHVRTGSDTMFVAPVTIGDGAYTGAGTVVREDVPPGALAVSAGPQRNIENWVQRKRPGSPAAQAS 474
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395 ||    412       422       432       442       452       462       472  
                                                                                                                                                                                                                                                                                                                                                                                                                                 397|                                                                     
                                                                                                                                                                                                                                                                                                                                                                                                                                  405

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "CATH Domain" information available for 4G3S)

(no "Pfam Domain" information available for 4G3S)

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Asymmetric Unit
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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
		Ala A:422 - Pro A:423	[ RasMol ]
		Gly A:305 - Pro A:306	[ RasMol ]
		Gly A:338 - Pro A:339	[ RasMol ]

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

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		Orientation in Membranes	:	OPM
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	2.7.7.23
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 7)

Sites (7, 7)

SS Bonds (0, 0)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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Gene Ontology (19, 36)

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