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(-) Description

Title :  CRYSTAL STRUCTURE OF GLMU IN COMPLEX WITH ATP
 
Authors :  N. Vithani, B. Prakash
Date :  16 Apr 13  (Deposition) - 16 Apr 14  (Release) - 18 Jun 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.98
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Rossmann Fold, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Vithani, V. Bais, B. Prakash
Glmu (N-Acetylglucosamine-1-Phosphate Uridyltransferase) Bound To Three Magnesium Ions And Atp At The Active Site
Acta Crystallogr. , Sect. F V. 70 703 2014
PubMed: search  |  Reference-DOI: 10.1107/S2053230X14008279

(-) Compounds

Molecule 1 - BIFUNCTIONAL PROTEIN GLMU
    Chains: A
    EC Number: 2.7.7.23, 2.3.1.157
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: GLMU, MT1046, RV1018C
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 1773
    Synonym: UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE, N- ACETYLGLUCOSAMINE-1-PHOSPHATE URIDYLTRANSFERASE, GLUCOSAMINE-1- PHOSPHATE N-ACETYLTRANSFERASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 8)

Asymmetric Unit (4, 8)
No.NameCountTypeFull Name
1ATP1Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2CO1Ligand/IonCOBALT (II) ION
3GN12Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-1-O-PHOSPHONO-ALPHA-D-GLUCOPYRANOSE
4MG4Ligand/IonMAGNESIUM ION
Biological Unit 1 (2, 9)
No.NameCountTypeFull Name
1ATP3Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2CO-1Ligand/IonCOBALT (II) ION
3GN16Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-1-O-PHOSPHONO-ALPHA-D-GLUCOPYRANOSE
4MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:14 , GLY A:15 , PRO A:16 , GLY A:17 , THR A:18 , ARG A:19 , HIS A:58 , GLN A:83 , ARG A:85 , PRO A:86 , GLY A:88 , ALA A:92 , GLU A:207 , MG A:502 , MG A:503 , HOH A:626 , HOH A:635 , HOH A:645 , HOH A:658 , HOH A:689 , HOH A:811 , HOH A:821 , HOH A:829 , HOH A:873 , HOH A:911 , HOH A:912 , HOH A:913 , HOH A:914 , HOH A:916 , HOH A:969 , HOH A:1000 , HOH A:1072BINDING SITE FOR RESIDUE ATP A 501
2AC2SOFTWAREATP A:501 , HOH A:811 , HOH A:873 , HOH A:909 , HOH A:911 , HOH A:914BINDING SITE FOR RESIDUE MG A 502
3AC3SOFTWAREATP A:501 , HOH A:645 , HOH A:912 , HOH A:913 , HOH A:966 , HOH A:1000BINDING SITE FOR RESIDUE MG A 503
4AC4SOFTWARETHR A:89 , TYR A:150 , GLY A:151 , GLU A:166 , ASN A:181 , ALA A:182 , TYR A:209 , THR A:211 , ASN A:239 , MG A:505 , HOH A:644 , HOH A:678 , HOH A:694 , HOH A:718 , HOH A:821 , HOH A:915 , HOH A:916 , HOH A:917 , HOH A:922 , HOH A:1000 , HOH A:1071BINDING SITE FOR RESIDUE GN1 A 504
5AC5SOFTWAREASP A:114 , ASN A:239 , GN1 A:504 , HOH A:915 , HOH A:916 , HOH A:917BINDING SITE FOR RESIDUE MG A 505
6AC6SOFTWAREASP A:417 , MG A:507 , HOH A:962BINDING SITE FOR RESIDUE CO A 506
7AC7SOFTWAREASP A:417 , CO A:506 , HOH A:607BINDING SITE FOR RESIDUE MG A 507
8AC8SOFTWAREARG A:344 , LYS A:362 , PRO A:373 , HIS A:374 , TYR A:377 , ASN A:388 , ALA A:391 , ASN A:397 , LYS A:403 , HOH A:679 , HOH A:827 , HOH A:854 , HOH A:898 , HOH A:954 , HOH A:970BINDING SITE FOR RESIDUE GN1 A 508

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4K6R)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Gly A:305 -Pro A:306
2Gly A:338 -Pro A:339
3Ala A:422 -Pro A:423

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4K6R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4K6R)

(-) Exons   (0, 0)

(no "Exon" information available for 4K6R)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:469
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhh...hhhh.......hhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhh............hhhhhhhhhhh....................hhhhhhhhhhhhhhh................................hhhhh..hhhhh..........hhhhhhhhhhhh.........hhhhhhhhhhhh..........hhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.....hhh............................................................................................................................................................................................hhhhhhh...hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k6r A   6 DTAVLVLAAGPGTRMRSDTPKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPLVGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADLIATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVYAFDIAALRSALSRLSSNNAQQELYLTDVIAILRSDGQTVHASHVDDSALVAGVNNRVQLAELASELNRRVVAAHQLAGVTVVDPATTWIDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGTALGADGKLGAFVEVKNSTIGTGTKVPHLTYVGDADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRTGSDTMFVAPVTIGDGAYTGAGTVVREDVPPGALAVSAGPQRNIENWVQRKRPGSPAAQAS 474
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4K6R)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4K6R)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4K6R)

(-) Gene Ontology  (19, 36)

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  4k6r
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  GLMU_MYCTO | P9WMN2
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  GLMU_MYCTU | P9WMN3
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  2.3.1.157
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GLMU_MYCTO | P9WMN2: 2qkx 3d8v 3d98 3dj4 3foq 3spt 3st8 4g3p 4g3q 4g3s 4g87 4hcq
        GLMU_MYCTU | P9WMN3: 2qkx 3d8v 3d98 3dj4 3foq 3spt 3st8 4g3p 4g3q 4g3s 4g87 4hcq

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4K6R)